Basic Information

Insect: Diarsia brunnea
Gene Symbol: -
Assembly: GCA_949774965.1
Location: OX459009.1:16163911-16166466[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.9e-09 2.9e-06 27.9 0.0 1 40 15 54 15 58 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.9e-09	2.9e-06	27.9	0.0	1	40	15	54	15	58	0.92

Sequence Information

Coding Sequence: aTGGCTCCTCCAAAgagtaaaagaaaaagaaatgcaCCGTATACTCAAGATACTATTAACCAGGCACTTAGAGATATACGGGAAAAAAAGCTTTCCATTAGAGAAGTTTGTCGAAATTATGGAGTTCCTAGGGCAACTGTACAAGATCGAATATCTGGAAGAAGTAGTGattcgattaaaactcgagGTCCTGATCCTATACTTACCCATGAAATCGAAAGAAAAATAGTGGAATGGTTAATTGACATCGCTAAGTGTGGTTTTCCTATAAAAAAATCAGAACTGCTAGACACTGTTCAGAAAATCATAAAAGACTTAGGCTTGCAGACCCCTTTTAAAGACGACCGTCCTGGACAAACCTGGTTTTTGAAATTCTTGAAAAGGCATCCGGAAATTTCACAAAGATCTGCTGAAGGAATAAACAAGGCGAGAGCTAGGGTAACGAAGGAGTCAATTAAGCTCTGGTTTCGAGAACTTGAAGCGTTTCTGGTAGAATCAAATCATCGTGATATATTGGAATCTCCGGAACGCATATTCAATGGAGATGAGAGTGGGTTCGCCCTTTGCCCAAAAACAGGAAAGGTCCTTGGTCCTCGAGGGTACCGCAATCTTTACCAAATTAAAAATGGCAGTGAAAAAGataatttaactgttttggTGACATTTAATGCTAACGGGCAAGTATGTCCGCCACTAATAGTTTTTCCATATATTCGCCCGCCAAAACAAATAGCAGATAGCATGCCACCACATTGGGTCCTCGGAAGGTCTGAGAGTGGTTGGATGCGAACTGATGTATTTTTTGAATACATTAcgaatgattttaataattggtTACTAAGTAACCAAATTCAAAAACCCATTCTCTTACTGGTAGATGGACACAAATCCCATATGTCAATTGGGTTGAGCGCGATGTGCGAGCGATTGGAAATAATTCTTTACGCTCTGCCACCTAACACCACGCACATACTTCAACCAGCAGATGTCAGCGTTTTTGGGCCTTTGAAATCAGAGTGGAAAAAAGTagtgaggaagtttttgacaaaGCCAGAAAACATAAACTCTTCTGTCACCAAGACTAATTTTTGCGCTCTTTTCAAAGACTGCCTGGAAAATACAAATATGCTGCGAAATATAATTAATGGCTTCAGAAAATGTGGACTTTATCCATTTGACCCTGATGCAGTGGATTACACGAAATGTGTCCAGAATACCCTGGAAAGATTAAACAATTCAAAGACACCCGAACGAAATTCTAAAGAAATAACCAACGCAGACCTAGTTTCCACAAGAAAGgttttgaaaaatttaaaattgactCTGGCCGAAAGAAACATAAACGTGGCTGTTATATTGAAGGAGATGAAGAAACTGAAAAGAAAGTCTTCTCAAATACAATTTGCTGACGTTTTATACGAAACATGCTCTGAAGACCTGACGAACTCAACAGTCAATATTACAACATCTCAAATAGTCgaagaagataataatatgaccaGCCAATTAGATGATATCAACATGACTGAAATGGTGTCCTTTGAAACCATTCCACAAAGCCAGGCTGACGAAGACTTGCTTCTCCAATTGAGCAATATAAGACCGCTAAGTCCTTTCAAAACTCCAGAAAGTCTGTGCAACATAGGCCAAGTTAAAAGTGTTCCAGTAAGTCATGGTGTTCTAGTAACTCACTCAGATAAGGATTCATCTACCGAAGCATCAGAATCGTTGATTGATAACGACATTTCTACATTGCATTTGTCAGGAAGTTATTTGGATGTTGGTTCTTTAGTATCATTGGATGATGTTCTTATAATACCAACTCAAATAAGTCTGCCAACAACAACAGTACTGCCAATGTCTGAAAGCGTAAAAGATTGCCGCGATGCAATAATAACCACTCAATGTAGTACAATAACCACCAATTCCACAGTATTAATGCCACAACCACCCATGATATCAAACAAGACCTCTGAACCATTGGAAAATACATTAACTCGACGCAATGTGCTGGTTGATATTCCAATAAAACAGACTAGTACACCTAAACAAACTAGTAAAACAAAGGAAACAGATATtatagaaaaacatttatttaaaccgCAACCTGCAAAAAAATCTGACACTAATAACATTACACGTACACCTTTATCTGCGGCAATTTCATCGGCGGAGTATCGAAAATTTTATGAAGATaaagaaaaagttaaaatagaGAAGTTAGAATTGAGAAAAAAACGAcaagaaattttgaaaaagaaaagaatagaaAAAGAACAGTTAAAGAATGCTAAAGTTACAAAACGAAAAATCGCGAAGTCCAAGAAACCCATGAAGGAAAACGAAAGAGTTAAAGTAGATTGCGCCATGTGTCAAGATATTTTAATAAGTGATACAGAAGAAGATCCTGAAAGAAATATTGGATGTGATTTTTGCACCAAATGGTATCATTTAAGATGCACAGACTTCGCTGGACTAAAATATGAAGAAGTACAAGACAAACCCTTCAAATGCAATGCTTGCATTCGTAAtcagtttaattacaattataattaa
Protein Sequence: MAPPKSKRKRNAPYTQDTINQALRDIREKKLSIREVCRNYGVPRATVQDRISGRSSDSIKTRGPDPILTHEIERKIVEWLIDIAKCGFPIKKSELLDTVQKIIKDLGLQTPFKDDRPGQTWFLKFLKRHPEISQRSAEGINKARARVTKESIKLWFRELEAFLVESNHRDILESPERIFNGDESGFALCPKTGKVLGPRGYRNLYQIKNGSEKDNLTVLVTFNANGQVCPPLIVFPYIRPPKQIADSMPPHWVLGRSESGWMRTDVFFEYITNDFNNWLLSNQIQKPILLLVDGHKSHMSIGLSAMCERLEIILYALPPNTTHILQPADVSVFGPLKSEWKKVVRKFLTKPENINSSVTKTNFCALFKDCLENTNMLRNIINGFRKCGLYPFDPDAVDYTKCVQNTLERLNNSKTPERNSKEITNADLVSTRKVLKNLKLTLAERNINVAVILKEMKKLKRKSSQIQFADVLYETCSEDLTNSTVNITTSQIVEEDNNMTSQLDDINMTEMVSFETIPQSQADEDLLLQLSNIRPLSPFKTPESLCNIGQVKSVPVSHGVLVTHSDKDSSTEASESLIDNDISTLHLSGSYLDVGSLVSLDDVLIIPTQISLPTTTVLPMSESVKDCRDAIITTQCSTITTNSTVLMPQPPMISNKTSEPLENTLTRRNVLVDIPIKQTSTPKQTSKTKETDIIEKHLFKPQPAKKSDTNNITRTPLSAAISSAEYRKFYEDKEKVKIEKLELRKKRQEILKKKRIEKEQLKNAKVTKRKIAKSKKPMKENERVKVDCAMCQDILISDTEEDPERNIGCDFCTKWYHLRCTDFAGLKYEEVQDKPFKCNACIRNQFNYNYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00445072; iTF_00913538; iTF_00039731; iTF_00711781; iTF_01532972; iTF_00039733; iTF_00951770; iTF_00186099; iTF_00237433; iTF_00237434; iTF_00906984; iTF_00373883;
90% Identity: iTF_00445072; iTF_00711781; iTF_00039731; iTF_01532972; iTF_00039733; iTF_00951770; iTF_00186099; iTF_00237433; iTF_00237434; iTF_00906984; iTF_00373883;
80% Identity: -