Dbru012469.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diarsia brunnea
Gene Symbol
PGBD4
Assembly
GCA_949774965.1
Location
OX459004.1:19338868-19345510[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.3e-09 3.9e-06 27.5 0.0 1 40 269 308 269 312 0.92

Sequence Information

Coding Sequence
ATGTCAGGACGACGATATGAGCAAATTTTGCGCTGCATCTGTGCATCGGAATTAGATGCAAAGGGAGAAAATAAGATTGTGAAATTCATTGATATGTTGACACTAAACTTTCGTAAAATTTACAATGCTGGTGAAGAGTTGTCACTGGATGAGTCGCTTCTTCTGTTTCGGGGTCGATTGATCTTTCGTCAATACATCAAGTCGAAAAAAGCTCGCTATGGCATCAAATTCTATGAGCTCACTACATACGATGGCTATGTGCTAAATGTAAAGATGTATTCGGGAAAGGAAGCGACAACACCAAACATGGGTGAGTCTGAGTCTAAGACAGAAAAACTTGTTATGAGGTTAATGCGTCCATACTTGCTACGCGGACATCATCTTTTCATGGACAATTTCTATAATTCTGTGAAATTATCACAGAAATTGGTTGACCTGAAAACTCATTGTACTGGTACCTTGCGTTCAAATCGTAAAGAAAATCCTAAAACCATTGTAAAGAAAAAGCTGAAGAAAGGTGAACACGTGTGGGCACGCAAGGACAAAGTGTATGTTTCAAAGTGGAAGGACAAACGTCCAGTCTTGATGATTACCACTAAGGTACATCCTTCGATTGTGGAAGTGAGAAATAGATTTGGCAAGACCAGATTGAAACCTGCAGAAGTTGAACTTTATAACCGATACATGTCCGGTATTGATAGGTCCGATCAAATGGTATCCTACTACTCATGCCCTCGGAAAACGATAAGGTGGTATAAAAAGaTGGCTCCTCCAAAgagtaaaagaaaaagaaatgcaCCGTATACTCAAGATACTATTAACCAGGCACTTAGAGATATACGGGAAAAAAAGCTTTCCATTAGAGAAGTTTGTCGAAATTATGGAGTTCCTAGGGCAACTGTACAAGATCGAATATCTGGAAGAAGTAGTGattcgattaaaactcgagGTCCTGATCCTATACTTACCCATGAAATCGAAAGAAAAATAGTGGAATGGTTAATTGACATCGCTAAGTGTGGTTTTCCTATAAAAAAATCAGAACTGCTAGACACTGTTCAGAAAATCATAAAAGACTTAGGCTTGCAGACCCCTTTTAAAGACGACCGTCCTGGACAAACCTGGTTTTTGAAATTCTTGAAAAGGCATCCGGAAATTTCACAAAGATCTGCTGAAGGAATAAACAAGGCGAGAGCTAGGGTAACGAAGGAGTCAATTAAGCTCTGGTTTCGAGAACTTGAAGCGTTTCTGGTAGAATCAAATCATCGTGATATATTGGAATCTCCGGAACGCATATTCAATGGAGATGAGAGTGGGTTCGCCCTTTGCCCAAAAACAGGAAAGGTCCTTGGTCCTCGAGGGTACCGCAATCTTTACCAAATTAAAAATGGCAGTGAAAAAGataatttaactgttttggTGACATTTAATGCTAACGGGCAAGTATGTCCGCCACTAATAGTTTTTCCATATATTCGCCCGCCAAAACAAATAGCAGATAGCATGCCACCACATTGGGTCCTCGGAAGGTCTGAGAGTGGTTGGATGCGAACTGATGTATTTTTTGAATACATTAcgaatgattttaataattggtTACTAAGTAACCAAATTCAAAAACCCATTCTCTTACTGGTAGATGGACACAAATCCCATATGTCAATTGGGTTGAGCGCGATGTGCGAGCGATTGGAAATAATTCTTTACGCTCTGCCACCTAACACCACGCACATACTTCAACCAGCAGATGTCAGCGTTTTTGGGTCTTTGAAATCAGAGTGGAAAAAAGTagtgaggaagtttttgacaaaGCCAGAAAACATAAACTCTTCTGTCACCAAGACTAATTTTTGCGCTCTTTTCAAAGACTGCCTGGAAAATACAAATATGCTGCGAAATATAATTAATGGCTTCAGAAAATGTGGACTTTATCCATTTGACCCTGATGCAGTGGATTACACGAAATGTGTCCAGAATACCCTGGAAAGATTAAACAATTCAAAGACACCCGAACGAAATTCTAAAGAAATAACCAACGCAGACCTAGTTTCCACAAGAAAGgttttgaaaaatttaaaattgactCTGGCCGAAAGAAACATAAACGTGGCTGTTATATTGAAGGAGATGAAGAAACTGAAAAGAAAGTCTTCTCAAATACAATTTGCTGACGTTTTATACGAAACATGCTCTGAAGACCTGACGAACTCAACAGTCAATATTACAACATCTCAAATAGTCgaagaagataataatatgaccaGCCAATTAGATGATATCAACATGACTGAAATGGTGTCCTTTGAAACCATTCCACAAAGCCAGGCTGACGAAGACTTGCTTCTCCAATTGAGCAATATAAGACCGCTAAGTCCTTTCAAAACTCCAGAAAGTCTGTGCAACATAGGCCAAGTTAAAAGTGTTCCAGTAAGTCATGGTGTTCTAGTAACTCACTCAGATAAGGATTCATCTACCGAAGCATCAGAATCGTTGATTGATAACGACATTTCTACATTGCATTTGTCAGGAAGTTATTTGGATGTTGGTTCTTTAGTATCATTGGATGATGTTCTTATAATACCAACTCAAATAAGTCTGCCAACAACAACAGTACTGCCAATGTCTGAAAGCGTAAAAGATTGCCGCGATGCAATAATAACCACTCAATGTAGTACAATAACCACCAATTCCACAGTATTAATGCCACAACCACCCATGATATCAAACAAGACCTCTGAACCATTGGAAAATACATTAACTCGACGCAATGTGCTGGTTGATATTCCAATAAAACAGACTAGTACACCTAAACAAACTAGTAAAACAAAGGAAACAGATATtatagaaaaacatttatttaaaccgCAACCTGCAAAAAAATCTGACACTAATAACATTACACGTACACCTTTATCTGCGGCAATTTCATCGGCGGAGTATCGAAAATTTTATGAAGATaaagaaaaagttaaaatagaGAAGTTAGAATTGAGAAAAAAACGAcaagaaattttgaaaaagaaaagaatagaaAAAGAACAGTTAAAGAATGCTAAAGTTACAAAACGAAAAATCGCGAAGTCCAAGAAACCCATGAAGGAAAACGAAAGAGTTAAAGTAGATTGCGCCATGTGTCAAGATATTTTAATAAGTGATACAGAAGAAGATCCTGAAAGAAATATTGGATGTGATTTTTGCACCAAATGGTATCATTTAAGATGCACAGACTTCGCTGGACTAAAATATGAAGAAGTACAAGACAAACCCTTCAAATGCAATGCTTGCATTCGTAAtcagtttaattacaattataattaa
Protein Sequence
MSGRRYEQILRCICASELDAKGENKIVKFIDMLTLNFRKIYNAGEELSLDESLLLFRGRLIFRQYIKSKKARYGIKFYELTTYDGYVLNVKMYSGKEATTPNMGESESKTEKLVMRLMRPYLLRGHHLFMDNFYNSVKLSQKLVDLKTHCTGTLRSNRKENPKTIVKKKLKKGEHVWARKDKVYVSKWKDKRPVLMITTKVHPSIVEVRNRFGKTRLKPAEVELYNRYMSGIDRSDQMVSYYSCPRKTIRWYKKMAPPKSKRKRNAPYTQDTINQALRDIREKKLSIREVCRNYGVPRATVQDRISGRSSDSIKTRGPDPILTHEIERKIVEWLIDIAKCGFPIKKSELLDTVQKIIKDLGLQTPFKDDRPGQTWFLKFLKRHPEISQRSAEGINKARARVTKESIKLWFRELEAFLVESNHRDILESPERIFNGDESGFALCPKTGKVLGPRGYRNLYQIKNGSEKDNLTVLVTFNANGQVCPPLIVFPYIRPPKQIADSMPPHWVLGRSESGWMRTDVFFEYITNDFNNWLLSNQIQKPILLLVDGHKSHMSIGLSAMCERLEIILYALPPNTTHILQPADVSVFGSLKSEWKKVVRKFLTKPENINSSVTKTNFCALFKDCLENTNMLRNIINGFRKCGLYPFDPDAVDYTKCVQNTLERLNNSKTPERNSKEITNADLVSTRKVLKNLKLTLAERNINVAVILKEMKKLKRKSSQIQFADVLYETCSEDLTNSTVNITTSQIVEEDNNMTSQLDDINMTEMVSFETIPQSQADEDLLLQLSNIRPLSPFKTPESLCNIGQVKSVPVSHGVLVTHSDKDSSTEASESLIDNDISTLHLSGSYLDVGSLVSLDDVLIIPTQISLPTTTVLPMSESVKDCRDAIITTQCSTITTNSTVLMPQPPMISNKTSEPLENTLTRRNVLVDIPIKQTSTPKQTSKTKETDIIEKHLFKPQPAKKSDTNNITRTPLSAAISSAEYRKFYEDKEKVKIEKLELRKKRQEILKKKRIEKEQLKNAKVTKRKIAKSKKPMKENERVKVDCAMCQDILISDTEEDPERNIGCDFCTKWYHLRCTDFAGLKYEEVQDKPFKCNACIRNQFNYNYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-