Dabb003050.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000011.1:7461843-7483255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.066 9.4 8.6 0.2 1 23 202 224 202 224 0.97 2 18 2 2.9e+02 3.9 3.0 1 23 287 310 287 310 0.94 3 18 0.00041 0.058 15.5 2.0 1 23 316 338 316 338 0.98 4 18 0.32 45 6.4 0.9 1 21 353 373 353 374 0.93 5 18 0.026 3.6 9.9 1.8 1 23 504 526 504 526 0.98 6 18 8.3 1.2e+03 2.0 0.3 1 19 534 551 534 553 0.75 7 18 0.019 2.7 10.3 1.7 1 23 609 631 609 631 0.96 8 18 0.18 25 7.2 3.8 1 23 721 743 721 743 0.96 9 18 0.02 2.8 10.2 2.1 1 23 751 772 751 772 0.98 10 18 0.0065 0.92 11.7 0.2 1 23 863 885 863 885 0.98 11 18 7.4 1.1e+03 2.1 0.7 2 19 944 961 944 964 0.93 12 18 0.14 20 7.5 0.4 1 23 980 1002 980 1002 0.96 13 18 0.00079 0.11 14.6 1.9 1 23 1011 1034 1011 1034 0.95 14 18 0.53 76 5.7 0.9 2 23 1075 1097 1074 1097 0.93 15 18 0.12 17 7.7 3.5 1 23 1116 1138 1116 1138 0.94 16 18 0.18 26 7.2 0.3 2 23 1194 1215 1193 1215 0.95 17 18 0.51 73 5.8 0.3 1 21 1224 1244 1224 1245 0.93 18 18 2.9 4.1e+02 3.4 5.1 3 23 1306 1327 1304 1327 0.94
Sequence Information
- Coding Sequence
- ATGACAGATGGGAGTGGAGGAGGCCGAAATTCCGAAGAAATAGATGAATTTTTCGAAGATAAAAATGGCATTAAGATAGAAAATGATACCATGGTGGTAGAAGATTCAAAAGAAACGTTAAAAGAATTTCTCTTCGGCACACCTACGGCTCAGGAAGAGTATATTTTAGGGACAGATGCAACTACCGATATCCTTGCGATTGCGAGAAATTCTAAATTCGCAGACAGTGAATCAGTGCAGGTCCAGAATCAAGCAGATTTAGATGTCATAGTTTTGGACAGTGACAGCGATGACGACGATACACCAGGTAACAGCAGCCATATTCCTCATGTTATACAAAGTGTTGTATTAAATAATGATACATTGGATGATAATGGTTCTCATGAAGAAAGTTCTACCATCGATAAAGCAAGTAACCTTTCggcaataataataacaaatgtaGAGTCAGTtgtaaaatcttcaaaaaatagtTCAACTTCTCAAGTTCAAGAGAGTATTGTAGGTGAGGCGTTACATACTTCGGAGGCAAACATGGTTGTTGAAAATAAAGATGTACAAAATAGTCTGGTAGGTAAAAACAGGAATGattcaaaagaaaaatttaaatgtgaactttGTCCGTTTGCTGGTATGACGAGGTTTTCGTTGTCTAGACATATAATACTGCACACAAATACTGAAACGGAAAAAGATCCACAaccaacaaatattaaaaatactttgtgtCAATCTTCTGTAGAATCTAAAGTTGCAAAAGAAAGTTTAGAACACAAAGATTTAGAAAAAGATTTAGCGCCCAAAgattccaaaactcttttaaaaccTAAAGATTCAGAAATATctaaaaccaatatttttaaatgtagatTTTGTTCATTTACATCAAAAATCAGATTCGCCTTAAAGAGACATACATTATTAATGCATAAAGGTTCATTTAATTATATGTGTAATTATTGTCATTTTGTTACAAAAAGTAAGGTTGGATTAGTTAATCATATAAGGTCACATAAAATAGCAAAAACGAATTTCACCCGTGTTGAGAGAAAGTTGTTTGTATGCCAGAAGTGTAACTTCAAAACTCCTAATAATACATACTATCTAAAACACGTTGAAACGAATAAGAATCGTCGCCATTGTGCAGGACCAGGGCGTCCTTCGGCTGGAATAAATAAGGTAAAGATAACAAAAACGGTACGAAAAacggataatatttttattgcaatgCCAAAGACGCATTCAGTTGATGCCGAGAAAAAGTTTGTATGCCAAAGGTGTACCTTTAAAGCTCCTAATGAACAACGCTACCGAAAacacattttaattaataagaatcgTCGCACTTGTCGAGGGCGCCCGGCGGGCATGAGAAGTCAGATAAAGACAACAGGGATGGTACCAGGACCagataatatttctgaaaataacgTCACTAATATGAAAGAAGGTAAGACCACGTCTCAGTCTACAATAAGTAAAAAAGAGTCGACAGATTGTTCGCGTAAATATCAATGTGACTTCTGTTCATTCAACACCAAACAAGCCTATCAATTTAGAATACATAGAATTGTTCATACTAAATATAATCAACCTATCTACTCTTGTCAAAAATGTGGTTTTAAATCAACCGCAACAATCCTAAGAAAACACATGCCTCAAGAACACGGGGTTAAGTTTTATTTACCCGTGAACCTAAAGAAAACAAACATGATACTACGACcagataatatttctaaaaataatgtaaCCGATATGGAAGATGGCACGACCACCTCTCAGTCTATAATAAGTAAAGATGAGTCGACAGATGGTTCACGTAAATATCGATGTGAATTTTGTTCGTTCAGTACCAAACAAGCTTATCAATTTAGAGTACACAGAATTGCACATACTAAATATAACAAACCTATCTACCCTTGTAATAGATGTAGCTTTAAATCGACCGCAACAGTTCTTAAAAAACACGTTTCGAAAGTTCACGGGCTAACCATACGTTTGCCGGCGCCTACAATTGGCTGTCCTAGctcgaccaaaaaaaaaattggtgccGAATCTGGTTTAGATGGAACTAAAACGTTTCAAATTCAACAGGAGAGGAAAAATTTGAAATCAAGCACTGGTGAGTTAAATCAGTCCGACGACAAGTCTTCTCTGAATTTCCAGTGCTCATATTGCTCACATGTaagtaaaaatataagaaatttcaCAATACATCGTACTTTACATACTAAATATAAAGAACCCATTTATCATTGTAACAATTGTAACTATCGAGCAACTAAATCTGCTCTAAAAGAACATATGAATATTCATAGAGttgaacaatttaaaaatgatgataaaaacGATAGCAAGCCGCAGCTAAATATTCGAAAATCAGAAGAAATAAACTCATTAGAAAATGATAGAGGCCAGAACTATGAAAGTAATCATAAGGTTCAGTCATTAAATACAAGCAGTAGTAGGTTGAGACGTTCTGTTCATCACGCGACTGTCGGGGGCTTAACGAGTTTTAAAGATCAGTCTCAATTATTAGATAAAACAACAAGGATAACAAGTGATTTTCATTCGAATGCTCTGCTTTATGTATGTGAGATATGTGATTTTGTGACCAATGAAAAAGAAACATTACTCATTCACAAGCTTACACATTCCGGTTTGTCTTTACCGAAAGACGAACAGAAAATTAATTGTTCAGTTTCAAAATATAAGGTAGAGGATACTAATCAAAGTACAAATAACCTTGAACTGGCGTCTAAAACCGATATCCCCTCTAATAAGGATGAACCAGAAAGAGTATTCGTTTTTCTTGAAGATGGCAGAAGACAGTGCAGCGTGTGTTCAGGTATTTTTGCAACTTCACGAGGCTTTAGCAATCACAGTTGCGAAAAAGAATATGAGTTTTCCACATTTGTTACGTTAGGAGATTTAGGGTTTATTTGTAAAGTGTGTTCATTTAGCACCCCTAATAAAACTAGTATTACAAGCCATTTGGTGGTGCACAAAAGTTTCGAGAAAGCAGCAGTatttaaatgttcaaagtgcgACTTTCGTACAAAGTACAAAAGCAATCTTTGGATTCATTTGACAAACATTCACAAAGAGAAAAGGCCGCAACAACCCTCAAATGCAAGATATAATTGTgacatttgtaattttaaaacaaacagtCATCGTGTTATAAGAAGTCATAAACTTAATTCTCACGAAGAAGCACTAACGTGTAATATTTGTGGATATAAGACTCATTTTCCAGCGGTCTTGTTAAACCATAAGAAATATATTCACAAATTGGATGAAAGTGAAGATAATAAAATTGACGAAGCTAGTAAGGACATTGAATATAAATGTGATGCCTGCGATTTCAAAACTAACTATAAGcacaatttacaaaatcataAGGTTTTACATATCAACATAAATGAATTTagagtatataaaaataaaacttataattttaaaataaacaaaggaAAGGGTCGAAAGGCCAGTAGTCAAGCTAAAGTTTGTAGTAGCAATGGTAATAAAAAGCCCACAACAAAATCTAATAAAACGTCTACACCTGAAAGCAAATTATCATGTGACTTATGTTCTTACAGTACTGTTTCTTCACCATCTTTTCTTAATCATCAATATATTCATAAATGTAAACAAGAAGGACGACTATATACATGTAATGGTTGCTCTTACAGTACTGTTGTACCAAGATACCttgatttacataaaaaaaggAGCAAAACATGTAGCACACCTGAAGAAGCAGAgttattcaacaataaaaaacTGCGTAATTCTAAACAAAGTACTGACCGAGATAATTCTAGTCAAAAGTCAAATACTATTTTGGAGATTAATGAGTCCAATAAATCACAGGTAACAGCAGAGTCTACTGAATCGCGTAGGCAATTCGGTTGTAAACATTGCGACTATAAAACTACAattaggtttaaactaaaaaaacACTTTGAAAAAAGACATTCTAAGAACCCAGAAGAAACTTGGCTTACAGCAGAAATATCAAATGGTGAATTAGAATTGAATGTTAACCAGGTATCTCGTAATGATCAGTCTGAGCTGATGAGTGATTGTAAAAGGGGTGAAGGTGTTCTTATTGCTGTTTGTAATGAATATTTTGCACTGGAATTTTCAAATACAGTTAGGCATACTGAACATTTGATTTTATGGTTAACCAGGGGCAATCTTAACTGA
- Protein Sequence
- MTDGSGGGRNSEEIDEFFEDKNGIKIENDTMVVEDSKETLKEFLFGTPTAQEEYILGTDATTDILAIARNSKFADSESVQVQNQADLDVIVLDSDSDDDDTPGNSSHIPHVIQSVVLNNDTLDDNGSHEESSTIDKASNLSAIIITNVESVVKSSKNSSTSQVQESIVGEALHTSEANMVVENKDVQNSLVGKNRNDSKEKFKCELCPFAGMTRFSLSRHIILHTNTETEKDPQPTNIKNTLCQSSVESKVAKESLEHKDLEKDLAPKDSKTLLKPKDSEISKTNIFKCRFCSFTSKIRFALKRHTLLMHKGSFNYMCNYCHFVTKSKVGLVNHIRSHKIAKTNFTRVERKLFVCQKCNFKTPNNTYYLKHVETNKNRRHCAGPGRPSAGINKVKITKTVRKTDNIFIAMPKTHSVDAEKKFVCQRCTFKAPNEQRYRKHILINKNRRTCRGRPAGMRSQIKTTGMVPGPDNISENNVTNMKEGKTTSQSTISKKESTDCSRKYQCDFCSFNTKQAYQFRIHRIVHTKYNQPIYSCQKCGFKSTATILRKHMPQEHGVKFYLPVNLKKTNMILRPDNISKNNVTDMEDGTTTSQSIISKDESTDGSRKYRCEFCSFSTKQAYQFRVHRIAHTKYNKPIYPCNRCSFKSTATVLKKHVSKVHGLTIRLPAPTIGCPSSTKKKIGAESGLDGTKTFQIQQERKNLKSSTGELNQSDDKSSLNFQCSYCSHVSKNIRNFTIHRTLHTKYKEPIYHCNNCNYRATKSALKEHMNIHRVEQFKNDDKNDSKPQLNIRKSEEINSLENDRGQNYESNHKVQSLNTSSSRLRRSVHHATVGGLTSFKDQSQLLDKTTRITSDFHSNALLYVCEICDFVTNEKETLLIHKLTHSGLSLPKDEQKINCSVSKYKVEDTNQSTNNLELASKTDIPSNKDEPERVFVFLEDGRRQCSVCSGIFATSRGFSNHSCEKEYEFSTFVTLGDLGFICKVCSFSTPNKTSITSHLVVHKSFEKAAVFKCSKCDFRTKYKSNLWIHLTNIHKEKRPQQPSNARYNCDICNFKTNSHRVIRSHKLNSHEEALTCNICGYKTHFPAVLLNHKKYIHKLDESEDNKIDEASKDIEYKCDACDFKTNYKHNLQNHKVLHININEFRVYKNKTYNFKINKGKGRKASSQAKVCSSNGNKKPTTKSNKTSTPESKLSCDLCSYSTVSSPSFLNHQYIHKCKQEGRLYTCNGCSYSTVVPRYLDLHKKRSKTCSTPEEAELFNNKKLRNSKQSTDRDNSSQKSNTILEINESNKSQVTAESTESRRQFGCKHCDYKTTIRFKLKKHFEKRHSKNPEETWLTAEISNGELELNVNQVSRNDQSELMSDCKRGEGVLIAVCNEYFALEFSNTVRHTEHLILWLTRGNLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -