Dabb014737.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000054.1:3318397-3329631[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0065 0.93 11.7 0.9 1 23 1049 1071 1049 1071 0.97 2 10 1.5 2.2e+02 4.3 6.4 1 23 1080 1102 1080 1102 0.96 3 10 5.8e-05 0.0082 18.2 6.4 1 23 1111 1134 1111 1134 0.98 4 10 0.002 0.28 13.3 0.7 1 23 1141 1163 1141 1163 0.98 5 10 0.99 1.4e+02 4.9 3.8 1 23 1168 1191 1168 1191 0.95 6 10 0.13 19 7.6 1.3 1 23 1199 1222 1199 1222 0.95 7 10 0.00033 0.047 15.8 4.2 1 23 1262 1285 1262 1285 0.96 8 10 0.0068 0.97 11.7 4.1 1 23 1294 1317 1294 1317 0.97 9 10 0.058 8.3 8.7 2.7 1 23 1322 1344 1322 1344 0.98 10 10 0.022 3.1 10.1 0.2 2 23 1498 1520 1497 1520 0.97
Sequence Information
- Coding Sequence
- ATGGATAAAACAATAGCGGAGCTTGATGGGACACTGGTCTTAAATTACATCGACGATGATATCGAAATAATGGAACCTTTAGTTTTGGAAGAAGATCCTCCGGAACCCGCATTTTCATTTGGAGAACCCATGGAACCAGAGAATCTCGAGCTAGACACAAGCTTTGATGAAAATCAGAACCCCAAACTTGAATCTAAAGCTGTTACTCCTGAAAGAACACCTAAGAGAAACAAAGACTTGATAATTCTTCTGGAAAACCGAGTTTTATCACCTGCTGTAAATGAGGATATAAAATTGGATTTCGAAGAAATAAAAGTAGATATTTCTGAGGACAGTAATAGTTTAGAGCATATTAATCCTGAAGAAATTAAGGAGAATACTGTAAGAACTAAAAGAGCCCGATCTCCTGAGGTAACCAAAAAGTTACCAACACCGATAGCTAAAAAAGTTAAAAGTGGAGATACTGTTGTTaatgatttaaatattaaaacattaaataattctTTAGAAACAAATGGATTAGAACCCATAAAGCGTAAGAGAGGCAGACCTAAAAGTTTAGGCGTTAAAACACCAAATGTATCCAAAATACCTGTATCAAAGACTTCTCTACGTAAAGAtactaaaaaaaatcgtttaagtgTTAAACAGAATGCTAATATTACAGAAACCAATCACTTAGAACCTATTAAAGCCAAGAGAGAGAAATCTAGAAAGTTGGGAGCAAAGAATACCATTGTTTCATCTAGTCCAAAAGCAGCAGCTGAAGTTACTAAACCTAAGAGAGGTAGACCTAAAAGCTTAAAAGCAGCTATAGTTGATGTTAGTCTGGTATCTAATGCAACTTCTGTAAAGTCTAAAGACTTGGATGCTCTAAAAGAAACAACTTCACAATTACAGCCtgcaaaatctaaaaataatgtaGACACTAAACAACATGAAGCTGAAGTGGAAACTCCTAAACGTAAAAGAGGTAGACCTAAAGGTTTCAAACTAAAGAAAGACCCTATTTCTGAAGTTGATAAAGCTTTAGACAACTCTAAAGTCAAACAAACTGAAACCACAGATAAAGCAACAACACAGTTGGATCCCTCGTCAAAAAGCAGCAATATAGATTTATCTGATTGTAAAGTAAACGAAGCAGGAAGTTTAGAAGCAAATGAAACATTTTCATTTGTGATTTCTAACTTTGAAACAAGTGAGGATGCAAAAATCGATATAAAAAGTGTATATTTACTGCCATCTAGAGGTAAAAAGGGGAGACCGAAAAGTTTAGAAGCAAAACAAGCAAATTTGAACTTTGAAAAAAGTGAAggtgaaaatttaaatactaaaacAGATGTAAGAAGTCAATATTTACCACCACCTAAAAGTAAAACAAGAAGACCGAAAAGTTTAGAAGCAAAGAACGTTGCTTTTCCTGAGACATCTAAAAATTCTTCCAGTACTAGTATAACAAATTTGATAAAAGAatcgaatttaaatttaaacaatgcaAAGAGTTCTAAACTAACAGCTACCACAGATGGAGATTTAAAAGCAAGGACTTTGGATGTTAcagcaaataataaaaatgaaaaacttccTAAAACTAAAATTGGTAAAACCAAGAATTCAGTAGCGAAAGGAAAACCTGCAATTATACCAATAGGTTCACAGCTTTCTAAAAGTAAAGAATCCGAAATTGGAAATGTGAAAGAAAAACCAGTGGCTGTTTCTGCAGAGCCTAATGATATAGAAGTTCCTCTGTCTAAGGCGGTTACAGCTAAAAACTTGACAGCAAAGATGGTGAACCCTTCAAAAGCAAAACCAATAAAGAAAAAGAGTTTGAAAGATAAGCAAAAGAACAATACATTAGAAACTATAGATTTAACAATTAAGAGCTTAAAGGctgctaaaaataaagtaaatctaaCTGAGAATAAAATTGTAAGATCTAGGGAAAATTCTAAAGTACGGTCTAAAGAAAGCATAGAAACGTGTTTACAAGAGAAGAAACATAATCGAATTGTGGAAATAATTGACTTACGGCCTTCTAAACCCAAGAAAGATAGACCTAGAAGTTTGGGATCTGTAGGAGTAAATCATTGTGTAACAACAACTGAACCACAACCGTCTACTTCAAATGAGAATATCGATGTAGAGCTCTCTACTCCTAGTAAACCTCGAGGTTACAGTTTAGGAGCCACATCAGCAACTggtattaaaaaaactaaaactttcAAGCAGCTTACGATAGAGGAAACCCAGATTGGCAACATGATGAGGAAACTGAATAATTCTTCTGAAGCAAATAAAGAATTTAAGTTTGCCAAACCGAAAAATGTTCAACCTAACCCGTTTGTAGTGAAAAAGGTTATTCCTTTTGTTGGAATTAATGATACAAAGCCCTCTACACCTGAAGGAGCTGAGattaagaaaaaagaatataaacataTAGATGCTTCTGTTGGAACTAAAGGTGTAGAGCCTCCTTTAATTAAAGATGTTGAAGTTCAAAGGAAGCCCAGTCTTTGTACTGTGGGAACACAAACTATAGAGCTTGATGATGATGAACCTGAAATACCTGAAGTAAAAGGTGCAGCGAGGAAAATGTCTGTAGGAACTCAGGCTTTGAGTAGTCCAAAAATTAAAGCTGTTGAAGTTAAAGGCTTAGGAAGAAAAACATCTGGTACTGCTAAGCAAAATGTAGATTTAGATGCTCGTGTAGAGAAGAATGCAACAGATAGCGAGAAAGTAAGCACACCTGCGCCTAAAGGAGGTAAAGCTACTGAAAAGAGAGATAGAAGTGAACAAAATATCACAACAATTAAAACTGAAACCTGCAATACAAATAGTGATGTAACCATGACTAGTAATCAGATTGAAGAATGGAGTCCTGGTCCAAATTTTACTGCTAATGCAACACTGGAATGTCCAGAAATTGGTATCAAATACGAAACACTCGAACAAATTCATACAGAATTTAAGTATGAATCTCAAAGTGAAGCTGAAATAATGATTAAAAGGAGAAAAATGTTGGGTGGTTCCATGCGTGGAAAAAAGAGAGGATTTAATAAGATGATGGGGCCTACAACCATTGACAATTTCCTTAGCATCGTAGATGTTAATGGAAAAGTACAAATGAAATTTAAGAACCAAATCTTTAAATGCGATCATTGCCTTTATGTGGGCAACTCCAAAGCCAATTTAGAGCGTCATAGCTTAATCCATAGAAACCCAGACGAGATCATCTGGTTCCACTGCACTGAATGTTCTTACAAATCCAAGTACGAACACCAACTGAAAAGTCATTTTTTGATTCATTTGAAGCCTGATCAGATTAAGTTTTTCCAGTGTCCGCACTGTGATGTTAAGTGTTCGAGGAAGCATAATCTCAATAACCATATCAAGAGCATTCATGCCATTAGAGAATATTCGTTCaggtgtGCAGAATGTGATTATTCGACATTTTCAAAAGATCGCTTGGTGGCTCACATCAAGAAACACTCCAAAGAAGTGCACGCGTGCACTCTTTGTAAATTCGTTACTAAAAGGAGGGAATACTTGGATTCCCATTTCAAAATGAAGCACACGGAACAAATTCCCAGACCTTTCCCGTGCGACACTTGTTCTTACAAAGGGAAGACTAAACGGGAGTTAGATAAACACTATGACAGGATGCATAATAAGGAACAACTGCACGTTTATCAGTGCAACCATTGTTCTTTCAACTCCATTTACAAGAAAAATTTGGAATTCCATCTGCTGCACATGCACAATAACTCTGAGGGTTTCCAGAAATTTATCTGCGGACATTGTCAGAAAACTTTCTCCTACAAAAATGGACTCAAAGTACATATTATCCGTTGTCACATTAAATTGCCTGAAGAATTTTGGCATAAATGTCTCGAATGTAAATACAGATCTAAAGATGTTTCCACACTTAAAAGACACATAAAAAGGAATCATGGAGCCCCCAGATTTCATTGTACGCAATGCAGCTTCGCCACGAACAGACAGACGTCTATGGAAGCTCATGTAAAGACTCATGAGTTTGATAATGAAGATATCTTGAAGGAACTCGAATTACTTAAAGAATACATATCTAGAAATGACGTATCTAAGAATAAATCTTTCCATGCAAACTGTGGGGGGTGGACCAATATCTCAGAAAAGGGAATTCTAACATCAGATAGAAGTGGAAAAAAGGCAACCAAAGAAACACCTCCTCTTTCTGGAGGAGATTATAGAACACTTGAAGCTAGCATTGTAATCATACATGTACATCTACATAAATATATTGATCCCACAAAGGAAGTTATAAACGACCAAAATTATATATTCCGGTCAAACTGTGAGGAAAACAATCAGATGGATAAAGCCCTGAGCAATTGTAAGGAGGATAAACAAATTGATAAAGCAGTTAAACCTTTGAAACTTCCCCCCACCCAACAGTATGCAGTCAAGGGGCTTTTAAACCTGAATCGCTCTGCACCATTAAAGGGTACAAAGTGTCCCGAATGCCCTTATCGAATCATACAAATGAGTTCATTTCTCTATCACATGAAAGTGATCCACGGGAAGCCCATCACCTCCAAAGATGCCGAACAGTATTACTTGCAGGATGACTAA
- Protein Sequence
- MDKTIAELDGTLVLNYIDDDIEIMEPLVLEEDPPEPAFSFGEPMEPENLELDTSFDENQNPKLESKAVTPERTPKRNKDLIILLENRVLSPAVNEDIKLDFEEIKVDISEDSNSLEHINPEEIKENTVRTKRARSPEVTKKLPTPIAKKVKSGDTVVNDLNIKTLNNSLETNGLEPIKRKRGRPKSLGVKTPNVSKIPVSKTSLRKDTKKNRLSVKQNANITETNHLEPIKAKREKSRKLGAKNTIVSSSPKAAAEVTKPKRGRPKSLKAAIVDVSLVSNATSVKSKDLDALKETTSQLQPAKSKNNVDTKQHEAEVETPKRKRGRPKGFKLKKDPISEVDKALDNSKVKQTETTDKATTQLDPSSKSSNIDLSDCKVNEAGSLEANETFSFVISNFETSEDAKIDIKSVYLLPSRGKKGRPKSLEAKQANLNFEKSEGENLNTKTDVRSQYLPPPKSKTRRPKSLEAKNVAFPETSKNSSSTSITNLIKESNLNLNNAKSSKLTATTDGDLKARTLDVTANNKNEKLPKTKIGKTKNSVAKGKPAIIPIGSQLSKSKESEIGNVKEKPVAVSAEPNDIEVPLSKAVTAKNLTAKMVNPSKAKPIKKKSLKDKQKNNTLETIDLTIKSLKAAKNKVNLTENKIVRSRENSKVRSKESIETCLQEKKHNRIVEIIDLRPSKPKKDRPRSLGSVGVNHCVTTTEPQPSTSNENIDVELSTPSKPRGYSLGATSATGIKKTKTFKQLTIEETQIGNMMRKLNNSSEANKEFKFAKPKNVQPNPFVVKKVIPFVGINDTKPSTPEGAEIKKKEYKHIDASVGTKGVEPPLIKDVEVQRKPSLCTVGTQTIELDDDEPEIPEVKGAARKMSVGTQALSSPKIKAVEVKGLGRKTSGTAKQNVDLDARVEKNATDSEKVSTPAPKGGKATEKRDRSEQNITTIKTETCNTNSDVTMTSNQIEEWSPGPNFTANATLECPEIGIKYETLEQIHTEFKYESQSEAEIMIKRRKMLGGSMRGKKRGFNKMMGPTTIDNFLSIVDVNGKVQMKFKNQIFKCDHCLYVGNSKANLERHSLIHRNPDEIIWFHCTECSYKSKYEHQLKSHFLIHLKPDQIKFFQCPHCDVKCSRKHNLNNHIKSIHAIREYSFRCAECDYSTFSKDRLVAHIKKHSKEVHACTLCKFVTKRREYLDSHFKMKHTEQIPRPFPCDTCSYKGKTKRELDKHYDRMHNKEQLHVYQCNHCSFNSIYKKNLEFHLLHMHNNSEGFQKFICGHCQKTFSYKNGLKVHIIRCHIKLPEEFWHKCLECKYRSKDVSTLKRHIKRNHGAPRFHCTQCSFATNRQTSMEAHVKTHEFDNEDILKELELLKEYISRNDVSKNKSFHANCGGWTNISEKGILTSDRSGKKATKETPPLSGGDYRTLEASIVIIHVHLHKYIDPTKEVINDQNYIFRSNCEENNQMDKALSNCKEDKQIDKAVKPLKLPPTQQYAVKGLLNLNRSAPLKGTKCPECPYRIIQMSSFLYHMKVIHGKPITSKDAEQYYLQDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -