Dabb050385.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- pol
- Assembly
- GCA_034092305.1
- Location
- JASJET010000275.1:875110-896785[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.34 48 6.3 1.0 1 22 2161 2182 2161 2182 0.89 2 9 0.0044 0.62 12.3 1.1 2 23 2191 2213 2191 2213 0.95 3 9 0.0025 0.35 13.1 1.9 1 23 2229 2251 2229 2251 0.98 4 9 0.00022 0.032 16.3 1.8 1 23 2256 2278 2256 2278 0.98 5 9 8.6e-05 0.012 17.6 0.5 2 23 2286 2307 2285 2307 0.97 6 9 0.00012 0.017 17.2 3.1 1 23 2313 2335 2313 2335 0.98 7 9 0.00033 0.047 15.8 1.3 1 23 2341 2363 2341 2363 0.96 8 9 1.2e-05 0.0017 20.4 4.0 1 23 2369 2391 2369 2391 0.99 9 9 0.51 72 5.8 2.3 1 23 2395 2418 2395 2418 0.85
Sequence Information
- Coding Sequence
- ATGGATGTAAATTACTTAGGTAATGAAGAGCTAAAGTACGAACTACATATTCGTGGCTTACCTCTTACCGGTACTTTTGCGCAAAAGCGGGCAGACCTACGAAATGCTTTGCGTCTGGAGCGCGAGTCTGAAACTGAACCCCAGATTCACCAGACACCTGTTTCTTATGACTTAATAGATCtgagtgataataataattttgatagtAACCCTGTTAATCAACAAAGTTTACCAAAGACCAACACAACATCATCTATCACTAATCATGCATATGTTGACCAAAACTCCCAGTTTGACTTAATAAACTTTCATAGTGAGGTACCAGCTCCAACCATATATTTTCATAATACTCGTAATACACAGCCCCCAATATCTGAACTTTCCCCATATAGCGCTAATTTTACGGAATCGTTATTAGACCGTGAAATTGCTGCTTCTACTGCCCCTTCATCTCCTGTTGCTTCTACGAGTTCAAGTCCTTTAGATCTTAGCACTCataacaaagcagtgtattttcgAAGTCCGACATTACTTGAAGATCACATGCCATTTATCGAGCACAATCCTCACCATCCCGTAGTGAATGTTGTTCAAAGTGCCCGTCAGTCACAAGTCAATCCAGTAACTAGACAACCAGCCCTTCCCTCACAACATTTGGATCAGTTACAGCCCGAAAGACTTGACACTGCCCTACCCCCACATCACGACATTGAACAGTTTAGGCAGCCCGTTACTGAGAGCGTTCCACGAAACGTGTACCCGTCCTATGACGAATTTCGACGTTCCGACAAACCCATAGTTCCTCAATCTCATATTGCCCCGTCATTGACTAGTTCTTGCTTACAGGCGATGCCTGGTAACACTTACAATGTTCAATTTCACAATCAGCCCATGACGACAATTCAGTCTAGGTCAAACAAGAATGTTACTCAGCCTCAAGTAAATCTGTCAGGATATTCTACTGCTGAGCAGTTGCGAAATTTTGATTCCCCTAGCAGAAATTTGAGAGCGCATGACCGTCCTTTGCCTAATAATGAGTGTGGCTCGTCACAAATCAGAATGAACGTTTTTTATTCCTTTACCCCTAATAAAGCCAATGTAAACTCAACCAGACCTTCAAAGATCCCTTCTCAGTCCATGCCCCTTGTTGATCTAACCAATCGATTGGATAATCTTGCGTTTTCCCCTCTCCGTGAATCTAACCGTAATGATTTGCCTACTTATGCGACTCCACCTCAGTTTTACGACATCAGTCGTTGGAACTTAACATATGATGGCCAGTCTAGCGTTACTAATTTTCTTGAAAGAGTTGAGGAGCTAAGATTATCAAGAGGTGTATCTAAAGATCATTTACTGCGTGCAGCACCCGAATTACTCACCCGCGATGCACTCTTGTGGTATCGAACCCGTTCATTTAATGACTGGGATGATTTAACCTCTCAATTACGGGAAGCTTTTCAACCTTATGATTACGAGGTTAGTCTTTGGGATGAAAttcgtaaaagaactcagggatcTCAGGAACGTGTCCTCAATTTTGTGGTTGCTCTGCAAAATTTGTTCCGTAAATTACCCGAACCACCTTCTGAAGCAGTACAGTTTCAACTGGTCCGCCGAAACCTTCTGCCATATATTCAGAGCCGTCTGGCTACTCACCAAATATCGTCATTATCTGAATTAATCCGAATTAGTCGAGCTATCGAGGAAACAGAGTTATCTCTCCAACGCTTCGCTCCACCACCTACTAATTACAGGCAACTTTTGGAACCTGAATTAGCATACCATAAGCCTACCCATCATGCTGCCTCAGTGGAATGTCCAAACCTAACTCCTCTAGACTCGTCGATGCAGTCATCCCCTGATTCTCCTACCGAACGTTCTGCAACCCTGACAGTTAATGCAAATGATGCAACGAGCCAACTTAGTTGCTGGAATTGTGATGGAAAAGGACACCGATTTCGTCATTGCGATAAAGCTCGTAAGAAATTTTGTTTCCGATGTGGCAAAAAGGAAGTTACCAGCAAGAACTGCCCATCTTGTTCAAAAAAACGGCCTCTTGGCAAGGTCATAGGCCGTATTCCTTGCCAGAACTCTACGGCCATTGTATCTCGAAATGCTGTATTAAATTATGTGTTAGCGCATGCTAAGAGTGATCAGCGTCCCTTTttgaatgtgcaaatttatggtaAATCGTTTCTAGGTCTTCTTGATAGTGGAGCTTCTCGAACTATCCTCGGCTCTACCGGATGGAACTTATTGCAGTCCTTAAGCAAACTTAATCCATCGCCAACTTCCGAGTGTATTGTGGCTAATGGTCAATCCTGTCCCGTTTTAGGTGTGGTACAGTTACCTATTCAGTTGCGTGACCGTGTCATTTTGCTAGAGACTTTAGTAATCCCCGCGTTACCCCACACGCTTATACTGGGAATTGATTTTTGGACACGAATGGAAATTGTTCCTGATCTTTACGCCGGAGAATGGTCCTTTAGAACGGAAGAAACTCCAACGCCACAATTTTCTGCAATTCAGTCGGTAGAAATGCTTTCACCTCAACAAAAGCAGACACTAGATGCACTGATAGACGAAACATTTTCCACTATGGGCAATGGTCTTGGTTGCACAAATCTAGTGGAACTAGTTATCAAGACGGACTCACCGCCTTTAAAACAACGGTATTACCCCCTATCGCGAGCACTTCAAAATGAAGTAAACAATGAGCTGGCGCAGATGTTAGCCGACGATATTATTGAACCATCTGACTCTCCATGGTCATCTcccatagttatgatcaaaaagaAGAGTAGCGGCTGGCGCTTTTGTGTAGATTACCGCGCGCTTAATAAAGTCACCGTTCCAGATGCCTATCCTATTCCATACGTATCTGCCACTCTAGATAAACTGCGAGACGCTCGATTTCTTACAACGCTAGATATTAAATCAGCTTATTGGCAGATTCCCATCTCCAAAGAGTCTAGACCACTAACTGCCTTCACCGTACCATCACGAGGTCTTTTTCAATTTAAGCGTATGCCTTTCGGACTTACCAATGCCCCTGCGGTGTGGCAAAGACTTATTGATCGCGTCGTTGGTGTCGATCTAGAGCAATATGTTTTTGTGTATTTAGATGACGTTGTTATATGCACGCCAACGTTTGACGAACATATTCGAGTATTACGTGAAATCATTGCGCGCATACTACGTGCCGGTCTAACTCTCAATCgcgaaaaatgtattttctgcaaatccgagctgaaatatctaggttatgttgttaattcgtccggactttcagttgacccagagaaaatagacgctgttgtacgcatcccaactcccaaaaatgtttccgaggtgcgaagagtcattggacttgcgtcgtggtaccgaaggttcgtaccaaatttttcatctgttgtatcgccacttactgccctgaccaggaaaaacgttaaatttatttgGGATGAAAATTGTGAGGCCGCTTTTAAGTTAGTAAAAGAACATCTTATTAAGGCTCCAGTACTCTCTTGTCCTGATTTTGAAAAGCCCTTCACAATTCAATGCGATGCCTCAGATTTTGGTCTAGGTGCTGTTCTTTCCCAGGTCATCGATggtcaagaaaatgttatttgctATCTAAGCCGCTCACTAACTAAAAACGAACGGAAGTTTAGTACCACCGAGAAGGAGTGTTTAGCCGTACTATATGCAATCGATAAGCTCCGCCCATATATTGAGGGTACCCATTTTACAGTCATTACGGACCACTAcagtttaaaatggttaaattcgATAAAAGATCCTGTCGGTCGAATAGCGCGATGGGCCGTAAGGTTGCAACAGTACGATTTTGATATCGTCCATCGAAAAGGTAAAGAAAACGTCGTCCCAGATGCTCTTTCTCGCTCAGTGCCAATTATTGATGCAACAATAGAACAACCTGTCAGTCCTGTGCCAATAGATCGGTCCTCCTTATCTTCTGACCGATGGTACCAGGGAATGATCAAAAAAGTTGAAGAACGCCCTTCTCAGTATCCTTTGTGGTGCTTTGAAAATGGCACCTTGTACAAACGAGCTAGACTTCCTTATCCTTCACTAGCCGAACCCGAAGATACATGGCGTATTGTCGTTCCTCGTGAGCAGCGTTCTGCAATCATCAAGTCCCATCATGATCCACCTACCTGCGGTCATCTTGGTGTTTTCAAAACCTTCTCCAGGATTAGTCAGAGATATTACTGGCCGAGAATGAGAGCTgatgtggcaaaatatattcGTCGCTGCTATACATGTCTTCGAGCTAAACCTATCCAACAAGCTCCGGCAGGGCACATGCTCAGTGCACAGCCTACCGCTACTCGACCATGGCAAATTATTAGTATCGACATAGTTGGACCACTTCCACGTTCAAAGTCTGGCTATTCCTACATATTTTCGATCAATGCGGGTGAAGCTATGGCTGAGGACACTGGAATATTGGTAAGCCCAAAGCACGAAACGTTCGACAATAAAgagattattaaaaattgttgCGTATCCACGTCAGTAGTCGAAGCAGTCCTACAAACTCTAGTAAAACCTTCCATCTCATTAGAATTCACACAGAACTTAAACGCAACTCAAAAAATGTCTCTATTGGATGAAGATCCAAGTTTCACTGCGGTCGCTgccaacagtattccagGTCATCTCCTCGATGAAGAAATTCTCTCTCCAGTAGAAAGTTTACTCAGTTGTTCCGAAACGGAGgaaataatgaagaaaaagatGGTCAGGTCTTCTTCTGATTCCAAAGATGTGAACGAAAAACTAACCCCCACCTCTCCGGATACGCCGAGTAACGGCACCTATTCCTTATCGTTATCGGACGATAAGGAAGATTTCCTGATCGACGATGAGATCGCCGATCAGCCTGAATTGGTTTTCGAAGATCGGACACGAAATAACGAAGATAATATTATTTCGCTGCACTTCCAACAAGAAAAAGATAGCAGGAACGTTAAGcaGTATTTTATGCGAAAATCCAGAGCCAAATCGTATGAATTAGAGGCCAGTCCGCTCCCGTTGCGAAAAAGGCGGGATTTTCTTCGCAGTATGACAGGGAGTTTTGACAGTTTGTCACCTTGCGAAAGTATCGCCAGCGATGACTTGATGATGGAATACGATATAAGTCAACACAATGACGTTGACAGCTGTGATAGttCGTCTTCGAAACCATTGATATTATCCAGAAGTGGAACTCCTAACTATATAAAAGATTCCCCCCGTTCGATAAAAAGCAAACCCGCCACCCAGTCTTCCCCTGAAAAGAGGAATTCTTTGTACCAAATGGGGTATAGTACGATGGCGTACGATCCTGCCTCGGATTGTCTAACGCTGACTAAAAGTAACCATTCCGTTATTCAGCAGGATATTATTGGAATTAAAACCATGTTGTTGACACTTAAGAGGGTTTTAAATGAGtctgCAACTCAGACGTCGCTAGACAATGATCCGCAAATTTACCCTTATGAGAATAATACTGTtctaaataacaataacaatgaaTGCAAAATAGAATTGGCCGATTTAAGAAGACAAGTCATTTTTCTACAGGGCCAATTGGAAGATAAGGAAAAGAttgtaaataatttacaaaaacaaatagaTCATTTAGCAAATCAAAATACCAATTTTATTATAGAAGCTCCTTTATTGTTACCGTCGGACATCCAAAATAGGTGTAATGCGGCCACGCAAACAGATAGGACAAACTGTCGAATTTGTTTAACTCAAAGTGTTACAAAGATGACTGCTTTAAATGAGCCTTTAAAAGGACCAATGGTACCAAAACCACTGGTACAGGAAGCGATGGAGCTCGTTATGTCCGAAAAAGTAATCGTGAGTGAAAAATATCCTAAGGGGATTTGCGCTGTATGCGTGGAACTTCTCAaaatttcattcgatttaaagatTCAGTACCGACAATCTCAAATAAGCCTTGAGCAAGAATTACGGAATCTAGGGGAATTGAGTGATACTGAAGCTGATTCAGAGAAATGTAAAGGTAGCAAGGCTTTAGTTGAAATAGTTGTGGGATCGGAGAGGTTTAATATTAAAGACTTATTAATTGTCGAAGAggaaaatgaaaaagaagaagactatgaaggatttttgaataatttgggTAAATCAATAAGTGCCTCTTTTGtgaaaaaaggatataaaaaacctAAACTGAATTTAGAAGTTCCCTCTTTAGTTATTGAAAAAGTTCATCAagAGACAGAAAAAAATTTGGAAGATGAAAAGAATCTCCAAACGCAAGAAGAAATTTTTATAGAAACGATTGAAAGTTATGATGAACAACTTGAAGAAAACATGAACAATGAAGAAGATGATGAAATTTTTATCGACACCCCTGTAACGGATAGCATTGTTGACAGATTTATCACTTTAACTAATAATGATAAAGAGGCATTGGAATCAGCAATGAGTCTAAAATATAAATGTCCTTATTGTCACAAGCCGATGGCTACTTTGAAAAAAGTTAAGTTACATAGTCGGACTTGTGTGAAAAACAATCTGAATGCGAGATGTTATGTGTGTGGCCTAACTTTTGAGTTCCGAAAAAATTTATTGACTCATCTGAAACAGATGCATTTAGTAGACATAAAAAACTCTCATGGATCTAAAAAGGGAGAAAAACACAAGTGTAATGTTTGTAATAAAGTTTTAGGAAGCAATGGTAGTCTGTTCTACCATATGAGTAAACACTTAGGGAGAAGATATGACTGTGATAAATGCGATAAACGCTTTTACACACGAAGCCAAGCAGCAAATCACAGACAGACTCACAATCGTGATGATACGTTAGTGGTGTGCCCCATTTGTGGAAAAGGCTTTCATTATCAGAATGGTCTTTTTTATCATATGAAGATGCATACAAACGAAAGAAATTATCAATGTAGTTTTTGTCCGAGAAGattttatacAAGAAACTCTTTAAAAAGACACGAATTGACCCATACCGGAGGGAGACCATATGCTTGTACATActgtgacaaaaaatttagatcacTGGGTGAAGTGAAAAAGCACAAATTGTTACATACGGGCGAGCGCCCTTACCAGTGTAACTACTGTCATTTGGGCTTTACTCAAGCGCATAACCTCAAAGTGCACCTTATGACGCATCCTGGTGAATATCAGTGCAATCACTGCTCGAAAGGATTTgctgaaaaagaaattttaaggtttcATTTACGTAACAAACATGGAGTTAGTAACTCTGTAAAGGAAGAGGATGAACTTCATACAGATGAAGAGGAAGCAGAATTCTTGGAACATGAAGAACAGAATAAAAGTGCGATAGAAACTGAAAACCAAACCATTCCAGAAAAAGAGATGTTATTGGAAGACAATCAACAATATTTCATTACGGAAGAATATGTGAGTGATGAAGGGACATCGATTGTTCAAACTTATGAAGTGAGCGACGAGATTTTGGTGGAGACTGTTGAAGAAAATTTgcagtaa
- Protein Sequence
- MDVNYLGNEELKYELHIRGLPLTGTFAQKRADLRNALRLERESETEPQIHQTPVSYDLIDLSDNNNFDSNPVNQQSLPKTNTTSSITNHAYVDQNSQFDLINFHSEVPAPTIYFHNTRNTQPPISELSPYSANFTESLLDREIAASTAPSSPVASTSSSPLDLSTHNKAVYFRSPTLLEDHMPFIEHNPHHPVVNVVQSARQSQVNPVTRQPALPSQHLDQLQPERLDTALPPHHDIEQFRQPVTESVPRNVYPSYDEFRRSDKPIVPQSHIAPSLTSSCLQAMPGNTYNVQFHNQPMTTIQSRSNKNVTQPQVNLSGYSTAEQLRNFDSPSRNLRAHDRPLPNNECGSSQIRMNVFYSFTPNKANVNSTRPSKIPSQSMPLVDLTNRLDNLAFSPLRESNRNDLPTYATPPQFYDISRWNLTYDGQSSVTNFLERVEELRLSRGVSKDHLLRAAPELLTRDALLWYRTRSFNDWDDLTSQLREAFQPYDYEVSLWDEIRKRTQGSQERVLNFVVALQNLFRKLPEPPSEAVQFQLVRRNLLPYIQSRLATHQISSLSELIRISRAIEETELSLQRFAPPPTNYRQLLEPELAYHKPTHHAASVECPNLTPLDSSMQSSPDSPTERSATLTVNANDATSQLSCWNCDGKGHRFRHCDKARKKFCFRCGKKEVTSKNCPSCSKKRPLGKVIGRIPCQNSTAIVSRNAVLNYVLAHAKSDQRPFLNVQIYGKSFLGLLDSGASRTILGSTGWNLLQSLSKLNPSPTSECIVANGQSCPVLGVVQLPIQLRDRVILLETLVIPALPHTLILGIDFWTRMEIVPDLYAGEWSFRTEETPTPQFSAIQSVEMLSPQQKQTLDALIDETFSTMGNGLGCTNLVELVIKTDSPPLKQRYYPLSRALQNEVNNELAQMLADDIIEPSDSPWSSPIVMIKKKSSGWRFCVDYRALNKVTVPDAYPIPYVSATLDKLRDARFLTTLDIKSAYWQIPISKESRPLTAFTVPSRGLFQFKRMPFGLTNAPAVWQRLIDRVVGVDLEQYVFVYLDDVVICTPTFDEHIRVLREIIARILRAGLTLNREKCIFCKSELKYLGYVVNSSGLSVDPEKIDAVVRIPTPKNVSEVRRVIGLASWYRRFVPNFSSVVSPLTALTRKNVKFIWDENCEAAFKLVKEHLIKAPVLSCPDFEKPFTIQCDASDFGLGAVLSQVIDGQENVICYLSRSLTKNERKFSTTEKECLAVLYAIDKLRPYIEGTHFTVITDHYSLKWLNSIKDPVGRIARWAVRLQQYDFDIVHRKGKENVVPDALSRSVPIIDATIEQPVSPVPIDRSSLSSDRWYQGMIKKVEERPSQYPLWCFENGTLYKRARLPYPSLAEPEDTWRIVVPREQRSAIIKSHHDPPTCGHLGVFKTFSRISQRYYWPRMRADVAKYIRRCYTCLRAKPIQQAPAGHMLSAQPTATRPWQIISIDIVGPLPRSKSGYSYIFSINAGEAMAEDTGILVSPKHETFDNKEIIKNCCVSTSVVEAVLQTLVKPSISLEFTQNLNATQKMSLLDEDPSFTAVAANSIPGHLLDEEILSPVESLLSCSETEEIMKKKMVRSSSDSKDVNEKLTPTSPDTPSNGTYSLSLSDDKEDFLIDDEIADQPELVFEDRTRNNEDNIISLHFQQEKDSRNVKQYFMRKSRAKSYELEASPLPLRKRRDFLRSMTGSFDSLSPCESIASDDLMMEYDISQHNDVDSCDSSSSKPLILSRSGTPNYIKDSPRSIKSKPATQSSPEKRNSLYQMGYSTMAYDPASDCLTLTKSNHSVIQQDIIGIKTMLLTLKRVLNESATQTSLDNDPQIYPYENNTVLNNNNNECKIELADLRRQVIFLQGQLEDKEKIVNNLQKQIDHLANQNTNFIIEAPLLLPSDIQNRCNAATQTDRTNCRICLTQSVTKMTALNEPLKGPMVPKPLVQEAMELVMSEKVIVSEKYPKGICAVCVELLKISFDLKIQYRQSQISLEQELRNLGELSDTEADSEKCKGSKALVEIVVGSERFNIKDLLIVEEENEKEEDYEGFLNNLGKSISASFVKKGYKKPKLNLEVPSLVIEKVHQETEKNLEDEKNLQTQEEIFIETIESYDEQLEENMNNEEDDEIFIDTPVTDSIVDRFITLTNNDKEALESAMSLKYKCPYCHKPMATLKKVKLHSRTCVKNNLNARCYVCGLTFEFRKNLLTHLKQMHLVDIKNSHGSKKGEKHKCNVCNKVLGSNGSLFYHMSKHLGRRYDCDKCDKRFYTRSQAANHRQTHNRDDTLVVCPICGKGFHYQNGLFYHMKMHTNERNYQCSFCPRRFYTRNSLKRHELTHTGGRPYACTYCDKKFRSLGEVKKHKLLHTGERPYQCNYCHLGFTQAHNLKVHLMTHPGEYQCNHCSKGFAEKEILRFHLRNKHGVSNSVKEEDELHTDEEEAEFLEHEEQNKSAIETENQTIPEKEMLLEDNQQYFITEEYVSDEGTSIVQTYEVSDEILVETVEENLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -