Dabb012026.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000040.1:790105-804426[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.13 18 7.7 3.0 2 23 131 152 130 152 0.93 2 17 1.4 2e+02 4.4 0.2 1 23 161 183 161 183 0.81 3 17 0.00055 0.078 15.1 1.6 1 23 192 214 192 214 0.97 4 17 0.013 1.9 10.7 2.6 1 23 223 245 223 245 0.97 5 17 0.00015 0.022 16.9 2.1 1 23 254 277 254 277 0.96 6 17 0.1 15 7.9 0.6 1 23 286 308 286 308 0.96 7 17 0.15 21 7.5 3.4 1 23 317 339 317 339 0.98 8 17 0.042 5.9 9.2 4.4 1 23 348 370 348 370 0.94 9 17 0.0038 0.54 12.5 6.7 1 23 379 402 379 402 0.97 10 17 0.0014 0.2 13.9 0.2 1 23 412 434 412 434 0.98 11 17 0.12 17 7.8 2.5 1 23 443 465 443 465 0.98 12 17 0.00081 0.11 14.6 3.2 1 23 474 496 474 496 0.97 13 17 0.00033 0.047 15.8 5.5 1 23 505 528 505 528 0.97 14 17 0.0091 1.3 11.3 5.6 1 23 569 591 569 591 0.97 15 17 0.0091 1.3 11.3 5.6 1 23 600 622 600 622 0.97 16 17 5.7 8.1e+02 2.5 2.0 1 23 631 653 631 653 0.90 17 17 0.013 1.8 10.8 4.5 1 23 662 684 662 684 0.93
Sequence Information
- Coding Sequence
- ATGAGAAGATTGAAAATCGACATACTGGGACTGAGTGAAGTAAGATGGCCCGGCTCCGGAAAACAAAAAACAGAGCAAGGATACATTTATTATTCAGGCGGAGCCGACCCAGAACATCGATATGGAACAGCTATACTCGTTTCGGACAGAATGGCACAGTCGGTTGTGGACTTCGTTCCTCTGAATGATAGAATGGCACTACTGAAACTGCGAACAACTCATAGAGACCTGAATGTGGTTCAGGTTTATGCTCCGACAAGCGACAAtACATCAGTACACGATAGCCGAGAGGATTATGTGAAAAACGAATACGATTGGAACAATCAACAAACAAACGAGAACCTAAATTTAAACACACCCCATCTTCAGAAAAACGTCCCGAAGAAACTTAAATGCGATATGTGCGATTTTCAAACGAGGTACAAAAGTCATTTGTATATGCACAGTGTACGACATAAAAAACTCGAAGATGCTAATTGGTTTCAATGCCCTCAATGCGACTTCCAGGCGTTCGAAGAAAACGCATTGGATCGACACTTGGTCCAACATAAAAAACCCAAGGacgtaaaaatgttttattgcgaCAAATGCGATTTTAAGACAATTTATCAATACAATTTGAAGACCCACCTTATCGTCCACAAAAGCTCAGAGGAGGTCGTTCAATACGAATGCGAGCAATGCGAGTTCAAAACAATTCGGAAACAACATCTACAGGTTCACAGTCTTCGACATAAAAATCCCGAGGATATCAACATGTTTAAGTGCAGCGAGTGCGATTTTAAAACAATCCAAAAGGCTAATTTAACTAAGCATATTTTTCGGCGACATACACATCCGGATAAGGTTCCCAAATTTAAATGCGAGGTTTGCGATTTCCAAACCGCATCGCAAGAGACTATAAAGATGCACACCGTTAAACACAAAAACCCCGATGAAGTTCAAAAGTTTAAGTGTGACCAGTGCGATTATCAGACCATCTGGAAACGCTATCTGTATAAGCATCGCCGCCGTCACAGAAACCCCGAAGAGCTCAAACGGTTTAAATGCGATCAATGCAGTTATCAATCGATACgcaaagatgatttaaaaagacACTGTATGCGTCACAAAAACCCCGATGAAGTGTTGTTATTTAAATGCGATCATTGTGATCATCGAACGATACACAAAGGCGATTTAAAGAAGCACGTCCTACGTCGACATAGGAATCCGAAGGAAGATGTTGTGAAATTCAAATGCGAAGTTTGTGATTTTCAAACAATATCCCAAGACGTTCTAAAGGcgcatatcctaaaacacaaaaaaCCCgatgaaattcaaatatttaagtgtGACCAGTGCGATTATCAGTCAATATGGAAACGGTATCTAAAAAGGCACCGTCTCCGTCATAGAAACTCTGACGAGATCGAGCAGTTTAGGTGCGATCAATGCAATTACCAAACCATCCGTAAGGATGATTTAAAAAGACACTATTTTCGTCACAAAAAAGCTGATGAAGTGTTCTTATATAAGTGCACTCACTGTGATCATCGAACGATACAAAAAAGCGATTTAAAAAAGCATGTCTTAAGTCGACATAAAAATCTGGAGGAgaatattatgaaaattcagTGCGACGTAGATGATTTTCAAAGTATATCTCATGACGTTTTACAGGAGCACACTCTTAAACCCAAAGACCCTGATGAAGTTCAGATGTTTAAGTGTGATCAATGCAATTATCAGACAAACCAGAAACGGTATCTGACTAAGCACCTCCTTCATCATAGAAACCCCGATGAAATGCAAATATTTAAGTGTGATCAATGCAATTATCAGACAAACCAGAAACGGTATCTGACTAAGCACCTCCTTCATCATAGAAATCCCGCTGAAATGCAAATATTTAAGTGTGATCAGTGCAATTATCAGTCAGTCTGGAAAAGATATATGGATAGGCATCGTCTCCGTCATAGAAACCCCGATGAGGTCGAGCACTTTAAATGCGATCAATGCAATTATCAAACGATCCggaaagatgatttaaaaaggcACTGCCTCCGTCACAAAAACCGCAACAAAGCGTTACATTCAATGTGA
- Protein Sequence
- MRRLKIDILGLSEVRWPGSGKQKTEQGYIYYSGGADPEHRYGTAILVSDRMAQSVVDFVPLNDRMALLKLRTTHRDLNVVQVYAPTSDNTSVHDSREDYVKNEYDWNNQQTNENLNLNTPHLQKNVPKKLKCDMCDFQTRYKSHLYMHSVRHKKLEDANWFQCPQCDFQAFEENALDRHLVQHKKPKDVKMFYCDKCDFKTIYQYNLKTHLIVHKSSEEVVQYECEQCEFKTIRKQHLQVHSLRHKNPEDINMFKCSECDFKTIQKANLTKHIFRRHTHPDKVPKFKCEVCDFQTASQETIKMHTVKHKNPDEVQKFKCDQCDYQTIWKRYLYKHRRRHRNPEELKRFKCDQCSYQSIRKDDLKRHCMRHKNPDEVLLFKCDHCDHRTIHKGDLKKHVLRRHRNPKEDVVKFKCEVCDFQTISQDVLKAHILKHKKPDEIQIFKCDQCDYQSIWKRYLKRHRLRHRNSDEIEQFRCDQCNYQTIRKDDLKRHYFRHKKADEVFLYKCTHCDHRTIQKSDLKKHVLSRHKNLEENIMKIQCDVDDFQSISHDVLQEHTLKPKDPDEVQMFKCDQCNYQTNQKRYLTKHLLHHRNPDEMQIFKCDQCNYQTNQKRYLTKHLLHHRNPAEMQIFKCDQCNYQSVWKRYMDRHRLRHRNPDEVEHFKCDQCNYQTIRKDDLKRHCLRHKNRNKALHSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444500;
- 90% Identity
- iTF_00444500;
- 80% Identity
- iTF_00444500;