Dabb030300.2
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000118.1:571072-600006[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.18 26 7.2 1.5 2 20 119 134 119 139 0.75 2 16 0.038 5.4 9.3 3.3 2 23 160 179 160 179 0.92 3 16 0.33 48 6.3 0.3 3 23 189 206 188 208 0.77 4 16 1.4 2e+02 4.4 2.8 2 23 211 232 210 232 0.91 5 16 0.00066 0.095 14.9 1.8 1 23 237 259 237 259 0.97 6 16 0.47 66 5.9 1.1 1 21 263 283 263 284 0.88 7 16 2.6e-05 0.0036 19.3 4.8 1 23 291 313 291 313 0.98 8 16 0.82 1.2e+02 5.1 0.2 3 23 479 496 478 496 0.79 9 16 0.0051 0.73 12.1 2.3 1 23 500 522 500 522 0.97 10 16 0.016 2.2 10.5 1.1 1 23 528 550 528 550 0.95 11 16 0.25 36 6.7 0.2 1 23 554 578 554 578 0.85 12 16 1 1.4e+02 4.8 1.1 2 23 585 606 584 606 0.87 13 16 0.00029 0.041 16.0 2.8 1 23 612 635 612 635 0.93 14 16 0.00034 0.049 15.7 1.8 1 20 646 665 646 666 0.96 15 16 4.6e-06 0.00065 21.7 0.7 2 23 678 699 677 699 0.98 16 16 6.4e-07 9.2e-05 24.3 1.6 1 23 705 727 705 727 0.98
Sequence Information
- Coding Sequence
- ATGAAGAAAAACCAGTTTAGTTTAGAAAATGATGAAATCGTAGATATTACTGAAGATTTAGAATCCCATCTAGGgttcgAGGAAACATCACTGTTCCCACTAATTAAAACTGAAGGTGAAGAATATGAATTTGATTCGCCAGAATTAATCAATATTTCAGAAATTAAAGTTGATGCAGATGTAAACATAAAGCTAGAATCCAAACTAGAAATGGAAACTGCATTACATTCAGATATAAATACGGAATTAGACAAGGAACAATGTCCTGTGTGTGATGTAAATATAAAGCTTGAATCCAAACTAGAAATAGAAACTACGTTACATTCAGATATAAATACTGAATTAGATAAGGAAAAATGTCCTGTGTGTGGTAGACATTTTAAGTACTTAGCGAAACATTTAATGTTCCGACATGAATCCAAACTAGAAAGAGAAACTACGTTACATTCAGATATAAATACTGAATTAGATAAGGAAAAATGTCCTGTGTGTGGTAAACATTTTAAGTACTTAACGAAACATTTAAGGTTACAACATGAAGGCATAAAAAAGCATGAAGAATTATGCCCCGTTTGCGGaaaattgtttagaaatgttACTGAACATCTTAAAACTCACCAAGAAGAATTTCTCTGTTGCCAGTGTTGTGCCATTTTTAAATCTGCCGATCTATTAAAAGAACATTTAAAAGCTCATGATAATAATCATTATGTATGCGAGACCTGCAAAATGGTTTTCAAAACGCTTACTAACCTAGCTCTCCATAACCATACTCATACCAACATCTATGCCTGTCCAAAATGCAATGCAGTTTTTCTATCGAGATCATCTTTAAAATGCCatgtaaaaaaagaagaaaaacgctTTACATACCACTGCGATGTTTGCCAAAAGGTTTTTAATAAGTCGTATTGTCTTACCATTCATATGAGAGTTCATGCTGGCGAGAAAAAATATACTTTAAAAATTGACCCAGTTTCACCAAAAACACCAAAAATAGCACAAAGAAGAAATGCTACTGGGCCCAGAATAAAAGAATTAATTGGGCGAAAAATAAAAGCAGTTCCAAGGCCGAAAGTtaagagaaaaattacaaaaaagaaaaaagaaaaaaaatggagtTCAGATGATGATTATTGGATAAACGAAGATCCAGAATTATGTAAAGAAAATGATACCGATAAAAGTAGAAAGCCACGTAAATGTaaagaaaattcaaaagaaaaatcaGTACTCGAAAAGTTATCAATTAAATTAAATGCAGAACTACATACGGCAACTGATTTTAAAAGTGAAAGTGATTGGTCAGATGTAGATCCTGACTGGTCAGTGGATAAAGATAACTTTGAAGAagaaaataatgatatattaaggaaaaaatcgAAAGAAGAAAAAGATCAATCTGGCAAGAGAAAACAAGACAAATCTGGACTTTGTCCTCAATGTGGAAAAGTCGTCTCAGATATTAGAAGTCACATAAAAAGTCACACGAGTGTTTTTTCGTGCGATTTatgttttatcaattttaagaatgaaaaacatttaaatgaacaTAAAGAGGTGCATGAATCGGACAACCCATACAACTGTGATAAATGCAATATGATATTTAAGAATGTTACTAAATTAGCACTGCATAGGTTCTTACATACTGGGGCTTACACTTGTCCCATCTGTGGTTTTATTGCCACTAGTAAATTCAGAAACTCCATTATTGCCCATATAAAAAGGCACGAGGACAACTATGCGGTACGGTGTGAAATTTGTAACAAAGGATTTTTATGTAAGAAAAAACTAGAAGAACACATAGAATGGCATGAAAACATACCCAAATACGAATGCGAAATTTGCCATAAAAAGTTTCCCGTGAAGTCCTATCTGCAACTTCACAGTAAATTCAATCACAAGAAGGAGCTTTTTGGAACTGAAGAAATCTTCCAGTGTGAACTATGCGGAAGAAAATTTACGTTTGAAAAGAGTTTTAAAAGACATTTAAGTTGTATTCACAAAGTCGGAAAAGATTTCACAGTAAAATGTCCAGTGTGTGGCAAGCTGATTGCAAATAATCACAATTTAAAGAAACACATGAGGGTACATACTGGAGAGAAAAACTACAGTTGCGACGTGTGCGGAAAGACTTTCTCACAGAAACAATACGTCACTCGGCATCAGAAAGTGCATCAAGCTGATAGAGAGGGAAGAAAACGGTCTGGAGGTGATCCTTCGCAGTACAAGATTGAACCTTTAGTATAg
- Protein Sequence
- MKKNQFSLENDEIVDITEDLESHLGFEETSLFPLIKTEGEEYEFDSPELINISEIKVDADVNIKLESKLEMETALHSDINTELDKEQCPVCDVNIKLESKLEIETTLHSDINTELDKEKCPVCGRHFKYLAKHLMFRHESKLERETTLHSDINTELDKEKCPVCGKHFKYLTKHLRLQHEGIKKHEELCPVCGKLFRNVTEHLKTHQEEFLCCQCCAIFKSADLLKEHLKAHDNNHYVCETCKMVFKTLTNLALHNHTHTNIYACPKCNAVFLSRSSLKCHVKKEEKRFTYHCDVCQKVFNKSYCLTIHMRVHAGEKKYTLKIDPVSPKTPKIAQRRNATGPRIKELIGRKIKAVPRPKVKRKITKKKKEKKWSSDDDYWINEDPELCKENDTDKSRKPRKCKENSKEKSVLEKLSIKLNAELHTATDFKSESDWSDVDPDWSVDKDNFEEENNDILRKKSKEEKDQSGKRKQDKSGLCPQCGKVVSDIRSHIKSHTSVFSCDLCFINFKNEKHLNEHKEVHESDNPYNCDKCNMIFKNVTKLALHRFLHTGAYTCPICGFIATSKFRNSIIAHIKRHEDNYAVRCEICNKGFLCKKKLEEHIEWHENIPKYECEICHKKFPVKSYLQLHSKFNHKKELFGTEEIFQCELCGRKFTFEKSFKRHLSCIHKVGKDFTVKCPVCGKLIANNHNLKKHMRVHTGEKNYSCDVCGKTFSQKQYVTRHQKVHQADREGRKRSGGDPSQYKIEPLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -