Basic Information

Insect: Diaprepes abbreviatus
Gene Symbol: -
Assembly: GCA_034092305.1
Location: JASJET010000159.1:2049050-2056081[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.036 5.2 9.4 0.4 1 23 60 82 60 82 0.95

2 16 0.036 5.2 9.4 0.7 3 23 88 108 87 108 0.93

3 16 0.012 1.7 10.9 0.2 2 23 114 135 113 135 0.95

4 16 1.4e-05 0.0021 20.1 1.7 1 23 142 164 142 164 0.98

5 16 6.6e-08 9.4e-06 27.4 3.0 1 23 170 192 170 192 0.99

6 16 0.00012 0.016 17.2 2.5 1 23 198 221 198 221 0.97

7 16 2.4 3.5e+02 3.6 0.4 2 23 228 250 227 250 0.93

8 16 0.0022 0.31 13.2 0.7 1 23 317 339 317 339 0.97

9 16 0.89 1.3e+02 5.0 1.0 2 22 374 394 373 394 0.95

10 16 0.014 1.9 10.7 2.0 1 23 408 430 408 430 0.98

11 16 5.6e-05 0.0079 18.2 4.8 1 23 436 459 436 459 0.96

12 16 2.2 3.2e+02 3.8 2.0 1 23 489 511 489 511 0.94

13 16 0.00075 0.11 14.7 4.9 1 21 516 536 516 537 0.95

14 16 0.0036 0.51 12.5 1.1 1 23 555 578 555 578 0.95

15 16 0.65 93 5.4 4.1 1 23 583 606 583 606 0.90

16 16 0.76 1.1e+02 5.2 0.4 1 23 612 635 612 635 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.036	5.2	9.4	0.4	1	23	60	82	60	82	0.95
2	16	0.036	5.2	9.4	0.7	3	23	88	108	87	108	0.93
3	16	0.012	1.7	10.9	0.2	2	23	114	135	113	135	0.95
4	16	1.4e-05	0.0021	20.1	1.7	1	23	142	164	142	164	0.98
5	16	6.6e-08	9.4e-06	27.4	3.0	1	23	170	192	170	192	0.99
6	16	0.00012	0.016	17.2	2.5	1	23	198	221	198	221	0.97
7	16	2.4	3.5e+02	3.6	0.4	2	23	228	250	227	250	0.93
8	16	0.0022	0.31	13.2	0.7	1	23	317	339	317	339	0.97
9	16	0.89	1.3e+02	5.0	1.0	2	22	374	394	373	394	0.95
10	16	0.014	1.9	10.7	2.0	1	23	408	430	408	430	0.98
11	16	5.6e-05	0.0079	18.2	4.8	1	23	436	459	436	459	0.96
12	16	2.2	3.2e+02	3.8	2.0	1	23	489	511	489	511	0.94
13	16	0.00075	0.11	14.7	4.9	1	21	516	536	516	537	0.95
14	16	0.0036	0.51	12.5	1.1	1	23	555	578	555	578	0.95
15	16	0.65	93	5.4	4.1	1	23	583	606	583	606	0.90
16	16	0.76	1.1e+02	5.2	0.4	1	23	612	635	612	635	0.95

Sequence Information

Coding Sequence: atgagtttaaaaaatattaaatctgagCCTTCAGATAACATTTCTGATACAAAAACTGTACTATTTGATAATTTGCAAGCAGCACATGGAAACGATCAATCTTTACAAGGacctgaaattataaaaaatagttcaAAAACGGAATATTTAACAAAGGATTCTGACCAGGATGGTCTTTATCAGtgtgATGATTGTCCGAAGTTATTCTATGCATTTGAGTTATATGAAATACACAGATACATTCATTATCCTGTTGGAGACTGTCCACACTGTAAGAGATCCTACAAAAGTGCAAAACCATTTGGGGATCATATTGAAGATCATATAAAAAATCACATTAAATGTGAGTACTgcccgaaaatattttttatgagaaagtCCTATATTGGTCATATTGCTCAACACAAAAGGGAGGATAGAATCTTTGTATGTGGCTATTGTAAGAAGAATTTTCCTACTAAAAAACAACTTACATATCATGAAAGAGTTCATACGAATGAAAGACCTTACAAATGTGATCAATGtaacaaaacttttaaacagAATGGTTCCTTGAAGACCCATATGAACACACATATGGAAGAAAAACTGTATACTTGCCATgtttGTCAGGGGACATTTGCTACTACCTCAAGTTTGAAACGTCACGAAAAAAAGATTCATGCTACTGGGCGCACTATGGTGTGTAAGTTATGCGAAGCAGAATTTCTTAATCTTGATAGTTTTTTTCAGCATCGAATGGAAAAACATCCTGATTTAACTAGGTTGGCAGAAGCAGTTAAAGATGAAGAAATCGAAGATAAAGTAATCAAAGGGGGGGACGGTATAAAAACGCAGAAATGTATTTTATGCGGTGTATTGGTGGATTCGAATCAATATTATGCTCATCAGAACGATCATTTGGAAATGACCGTCGCTGAAGTAATGGAATGTGAAAGAACGCTCAAGTTCAGCTGTAAAAAGTGTGACGCCACATTAAGAACGAAACAAAATGCGGTTAGACATATGgatttacattttgaaaaaacttatttttgtccTATTGAAGGTTGTATACGCAAAAAACCAATGACCTACTTGTCATACACCAAACATCGTTACAACAACCATCAGAACGTCAAATGCCGAAATTGTAAATCCACTTTTGCAGGATACCTGGGATTCAAACGCCACCGCAGAACTAACCCTTGTAAAATTGCGGCCAGGAAAAAACGACTAGTGTATATGTGCAAATGGTGCAAATCGACATTCACTAATGTACAATTTTTATTGCTACACTACAATACGCATAAGCGAATTAATGTGTACAACTGTCACACTTGTAACAAAAAATTTCCTAGAtttaacaattttagaaaacatatgTCCGTCGTTCATACCGAAATTATCGATGCCACTAATACGGCCCCTTATCGAGTTGAATCTGATCAAATTATTAAAGACAAAGAAGTTCCCAAGAATAAATATTTCTGTGGAACTTGTAAGGAAGCATTTCATTCGAGAAAAATCTTCGAGGAACACGAAAAGGTGCATTTCAGATCGAAATTTCAGTGCAAAAAGTGCAAGAAATGTTTTATAAGGCAAACCAATTATTGGTATCATGTTAAAAACAAGCTGTGTTCTACTTGGTTAGCTGAAGCGATGCTTACGGAGATCAAAGATTTCACTTGTACGCTATGCGAAAGAGAATTATCGAATTTTAGGAACTTTGCAAGACATATGACCAACGTACATGGACAAGGTGATTATCATTGTAAGCATTGCGTCTCGAAATTTAACAGTTTGGAAAAATTTCGTGCGCACTTAGTCGCTAAACATCCGAAcgtgaaaaagtacttttgcacTCTTTGTGAAGCAACTGGTTTCGTTACTTTCAGGGAGTTTATTGCTCATAAGAGGGTTCATAAAAGGAGGTGTCATATAAAGCAGGTTCTTTGTAAGGTGACTATGGAAAATTTGGAGAATTGTAATAAAAAGATCAGTGTCAAGCAGGAGCTTCAATCGGATGAAGAGGGTGAAATTTTCGATGTTCCTGAAAAAGTTACAGTTAATGAAAATGGGGATATTCAGGAGTGTTAA
Protein Sequence: MSLKNIKSEPSDNISDTKTVLFDNLQAAHGNDQSLQGPEIIKNSSKTEYLTKDSDQDGLYQCDDCPKLFYAFELYEIHRYIHYPVGDCPHCKRSYKSAKPFGDHIEDHIKNHIKCEYCPKIFFMRKSYIGHIAQHKREDRIFVCGYCKKNFPTKKQLTYHERVHTNERPYKCDQCNKTFKQNGSLKTHMNTHMEEKLYTCHVCQGTFATTSSLKRHEKKIHATGRTMVCKLCEAEFLNLDSFFQHRMEKHPDLTRLAEAVKDEEIEDKVIKGGDGIKTQKCILCGVLVDSNQYYAHQNDHLEMTVAEVMECERTLKFSCKKCDATLRTKQNAVRHMDLHFEKTYFCPIEGCIRKKPMTYLSYTKHRYNNHQNVKCRNCKSTFAGYLGFKRHRRTNPCKIAARKKRLVYMCKWCKSTFTNVQFLLLHYNTHKRINVYNCHTCNKKFPRFNNFRKHMSVVHTEIIDATNTAPYRVESDQIIKDKEVPKNKYFCGTCKEAFHSRKIFEEHEKVHFRSKFQCKKCKKCFIRQTNYWYHVKNKLCSTWLAEAMLTEIKDFTCTLCERELSNFRNFARHMTNVHGQGDYHCKHCVSKFNSLEKFRAHLVAKHPNVKKYFCTLCEATGFVTFREFIAHKRVHKRRCHIKQVLCKVTMENLENCNKKISVKQELQSDEEGEIFDVPEKVTVNENGDIQEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -