Dabb055549.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000484.1:773075-780320[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 27 7.1 0.2 5 23 253 272 252 272 0.93 2 13 0.34 48 6.3 0.5 1 23 364 387 364 387 0.94 3 13 0.27 38 6.7 1.2 5 23 395 414 392 414 0.91 4 13 0.022 3.2 10.1 2.7 3 23 420 442 418 442 0.87 5 13 0.00039 0.055 15.6 1.8 2 23 445 467 444 467 0.97 6 13 1.2e-06 0.00018 23.4 0.1 1 23 477 500 477 500 0.97 7 13 2.2e-05 0.0032 19.5 1.2 1 23 505 528 505 528 0.95 8 13 0.099 14 8.0 0.4 1 21 571 591 571 595 0.88 9 13 0.0017 0.24 13.6 3.4 1 23 598 620 598 620 0.98 10 13 1.3e-05 0.0018 20.2 0.6 1 23 646 668 646 668 0.98 11 13 1.5e-05 0.0021 20.0 4.2 1 23 674 696 674 696 0.99 12 13 0.00036 0.051 15.7 1.6 2 23 703 724 702 724 0.96 13 13 5.6e-05 0.0079 18.2 1.7 1 23 730 752 730 752 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTAATTACATTCCAAGAAAATTCTCATTGGCCTGATCTTTTGCAAGTAACAAATGAACAATCTGATGATTTATTGGTACTTGACTATCCCAAAACAGATATTAATACTTTCTGTAGGGGATGTTTAGGAATTAAAAATGTTACTGACATGCAAGACTCAAAAATTGGTAATATTGATGTTATTAGGTTGTATGAAGAACTTATAAAAACTAAGatggaTACAACTAATGTACCAGCAAGAATGTGTACCACATGTGTTCTTCTACTTGTGAAAATAGATCAATTTATTAATATGATACAACATTCATATCAAGTTTTAGAAAATGCTGCACAAGAtataaaatgtttacaaaatacaGATTCAAATAGTTACGACCTTAAAAAAACACGTATATTGCAGAATATCTTGAAAGAGAAATTTTCATTTGTAGCAAAGTTCAAAAGTGATAGTAACATTCACGTTGAAATTCCACGTGCAGAAAATGAGCATAATGGTCTCTTTTCTGACCATGATGATTGGGATAATTTAAGTGTTCATCATGAAAGTGGTACCTCGGATGATGAAATTCCACTTGCGGAAAGATATAAAATTGATGTCAATAAATCAGCTTCTTTAAAAGGCACTAATAGCAAAAAACCTAGTAAGattataaaaaaaacatgtgagaaaagtaaagaaaatctagaaaattttcctgaaaataataggtcccaagaaaaaacaaaatctaaagatcaATCTTCACAAGATACATGTCCCATGTGTTTAAAAAATGTCagGAATTTGATAAAGCACCTTCAGTCAGTCCATTCTGTAGACTGgataaaaacaaaatgtttaaaatgtttataCACAAATGTTGATAAAGGAAAATTAGTGGAACATTGCAAAATATGTGTTAAGGAGGAATTTGATCCAGAATTAGACATAAAGGAATTGAGGGAGGGGGCAAGTGATATAGATTGTGTTCCCGATTTTCAAATTGAAGTTCAATATggAGAAGATGTAGAATGTGATCTGAAAGAAGACTTTGAAGGCAGAAAAAGAGGGCGTCCATCAAAAAACAGGAGTAACAAACATAAATTTGAATGTATTAAATGTGAACAAGGTttcaaaaattatgaagaaatagaaTCTCATTTTAAGacaatacACAACTCAGAATCCACCTGCATTCTTTGTGACCATGAATATAACAACTCCTTCAGCCTTCTTTATCATATGATGGTGAAGCATGGAAAGCTAAAATGCTGTAGACTCTGTTTagttagttttaagaattcaGAAGATCTAAACAAGCATTACAAATCTGAAGAACATAATACTAAATGTACAGTGTGTGGAGCACAgtttaAGAATAGAAAAGCCTTATATGAACACAGAAGAAAAAAACACCTAAACCCACAgttagaaaatcaaaaatataagtgTCCAGAGTGTCCAAAAGAGTTTGCAaatcaaaataatatcaaaagGCATATTTTAGTAGCTCATAATGACCTACGTTTTTTGTGTGATACTTGTGGACAAAGTTATACAACAAAAAGAAACCTTGAACTTCATATTCAAAAATTCCATGAGGGTCTAAAAGTTGAAACCAAAAATACCAAAAAGAACTTCTTTTGTGAAGCTTGCGGCAGAGAActgaaaattttccataaatatgCCATAGCAATGCATAGAGCAAAACATAAAGGACATAACTATGTTTGTAAAAAATGTTATGAAACATTTGAAacagaagaaatatttaaaaaacacgtTGAAGTACTTGGCCACCAATTATATGAATGTCACAAATGTCAGTCTCAATTTGTAAGGgaagaaaactttaaaattcatttaaagaaCCATGATGCACCTGGAtggaataaaaatatgtttgctaCTTGGGGAAAGTCAGCTAAACTAAGAAATGAAAAAGGCGAATTTGTATGCAGTTATTGCCCAAAAGTATTCAAAGACAAACAAAGATTGGACAATCATGTAAGAGTGCATACCAATGAAAGACCCTACAAATGTCACATTTGCGGGAAAGGTTTCAAAACGTGGATACATAGAAAAACACATCTAAATATACACTTGgGTATTAAAAAATGGGTGTGTAAATACTGTTCAAAAGCTTTTACAAACTCGTGTACCTTAAAGGGGCATGAAATGATCCATACTGGAGAACGACCTCATAGATGTCCTGAATGTAAAAAGGGCTTTATTACAATGTCTGCTATGAAAAAGCATAGAATGGTTCACTTCAGATCAGGTGGTTCCAGCTATGGAAAGAAGGGAAACCGAAACCTAAAAGATGAAGACAAAACTGCAAGTGATAGTGAAGAAAATGCCGAATATGCCTACAAATATGGACAGATGTTTACAGGGAGCGATGTGAGCTATGAAAGTTTCGAAGAACCTTCAAAAGTCGAATCAGGAGGGTTGGTTTCTATAGGAAAAGAATTAACTTGTTAG
- Protein Sequence
- MEVITFQENSHWPDLLQVTNEQSDDLLVLDYPKTDINTFCRGCLGIKNVTDMQDSKIGNIDVIRLYEELIKTKMDTTNVPARMCTTCVLLLVKIDQFINMIQHSYQVLENAAQDIKCLQNTDSNSYDLKKTRILQNILKEKFSFVAKFKSDSNIHVEIPRAENEHNGLFSDHDDWDNLSVHHESGTSDDEIPLAERYKIDVNKSASLKGTNSKKPSKIIKKTCEKSKENLENFPENNRSQEKTKSKDQSSQDTCPMCLKNVRNLIKHLQSVHSVDWIKTKCLKCLYTNVDKGKLVEHCKICVKEEFDPELDIKELREGASDIDCVPDFQIEVQYGEDVECDLKEDFEGRKRGRPSKNRSNKHKFECIKCEQGFKNYEEIESHFKTIHNSESTCILCDHEYNNSFSLLYHMMVKHGKLKCCRLCLVSFKNSEDLNKHYKSEEHNTKCTVCGAQFKNRKALYEHRRKKHLNPQLENQKYKCPECPKEFANQNNIKRHILVAHNDLRFLCDTCGQSYTTKRNLELHIQKFHEGLKVETKNTKKNFFCEACGRELKIFHKYAIAMHRAKHKGHNYVCKKCYETFETEEIFKKHVEVLGHQLYECHKCQSQFVREENFKIHLKNHDAPGWNKNMFATWGKSAKLRNEKGEFVCSYCPKVFKDKQRLDNHVRVHTNERPYKCHICGKGFKTWIHRKTHLNIHLGIKKWVCKYCSKAFTNSCTLKGHEMIHTGERPHRCPECKKGFITMSAMKKHRMVHFRSGGSSYGKKGNRNLKDEDKTASDSEENAEYAYKYGQMFTGSDVSYESFEEPSKVESGGLVSIGKELTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -