Dabb052905.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000322.1:615790-620520[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.026 3.7 9.8 2.2 1 19 172 190 172 191 0.97 2 9 0.00071 0.1 14.8 2.4 3 23 207 227 205 227 0.97 3 9 1.5e-05 0.0021 20.1 0.5 3 23 235 255 234 255 0.96 4 9 9.2e-05 0.013 17.6 4.1 1 23 261 284 261 284 0.96 5 9 0.0006 0.086 15.0 4.9 1 23 292 314 292 314 0.98 6 9 5.1e-06 0.00072 21.5 5.8 1 23 320 342 320 342 0.98 7 9 0.0017 0.24 13.6 4.0 1 23 348 371 348 371 0.97 8 9 0.00013 0.019 17.0 2.0 1 23 387 409 387 409 0.98 9 9 2.6e-06 0.00037 22.4 0.6 3 23 417 438 415 438 0.97
Sequence Information
- Coding Sequence
- ATGCCTAGGAAACCTGCTGAAAAAATATGTTGTGTGTGTTTGAACAACACTTTGAACCTCAACAAATTATCCGTAAAagatgaaaacaatattaatttgcAGAACAAACTTAAAACTTGTATTTCTGAAATTGAATGGTTAGTCTCTTACCAAATATGTGATCCATGTACGAATCTTCTCAATATTGTTCACACGTTTCGAGAGACGTGTCTTAAATCTGATCTTATTCGTAAACAGAAAGttgaagtaattaaaaataagaaatatgaaaCTCGAAGGGAAGTGACCCAAGAACTGAAAGAAGGAAGTTTAGAGGAAAGTGAGGCACAACAGAAGGGAATAGaagggaatttaaaatatgaaacttCATATGAGGACATCTATGAAACTAATTCAGAAGCACAAGATGATAATGTGGATGATCCAAGTTTCTTAAGTGATATTGATGAAAAGCCTGACTCCAAAGAAATCAAATTCGAAAGAACTCTGAGAAAAAAGCGGAAAAACCTGATCTTTACCTGTGAAAAATGTGAACATGTTTTTACTTCTAGCATTAAATTGATAGATCATTGTGTTGGAGATCATCAGATGAATATGAAGGAAGTCAGACCATTTGGATGTGAAAGATGTCCCAGTAGATTCTGCAACTCATCAAATCTTCTACAACATATTAAATACCATGACGCAGTAAGATCAAATATGTGTACATATTGTGGGAAAGGCTTTATTACAAAGACTGATTTGAATATTCATGAAAAGCAACATCTAAATAGAAGAGAATACCGATGTGATGATTGTGGAAAATGTTTCAATACACATAAAGATATAAGatCTCATAAATTGGTGGTGCATACAGACTCAAGTACTTGGAAGTACTGCTGTAAAGTATGCTTTAAACGCTTCCCTATAAAGTCAAACTATGACAGTCACATGAGAAGGCATACCGGAGACAAGAAATTTGTGTGTCACATATGTGAGAGAAAGTTTACAGATAAGTGTGTTTTGCAAAGGCATATGAGAACACATTCAAATGTTAGGGAATTTAAATGTCAGCATTGTGATAAGGAATATAAAGATCACAGAGTAATGAGGgttCATATGGCTAAAATCCATGGCATTGGTATTGGGGAAATAAAACTAccgacaaaagaaagaaaatacaTCTGCCACATCTGTCCTAAAGCATACTATGCAAAAAATAAGCTTACCAGGCATCTATATACTCACTCAGGAGAAAAACCATATGGCTGTGAGATTTGTggaaaaaaattcaatgataaaTCTTATGTAAAACAACACCTAAGAAAAGCTCATAATTTGGATGAGATACCCCCTGATTACGAGGATAATAAGATAAACTTGAATGGATTATCTCAGCAGGAAGGTTTATAG
- Protein Sequence
- MPRKPAEKICCVCLNNTLNLNKLSVKDENNINLQNKLKTCISEIEWLVSYQICDPCTNLLNIVHTFRETCLKSDLIRKQKVEVIKNKKYETRREVTQELKEGSLEESEAQQKGIEGNLKYETSYEDIYETNSEAQDDNVDDPSFLSDIDEKPDSKEIKFERTLRKKRKNLIFTCEKCEHVFTSSIKLIDHCVGDHQMNMKEVRPFGCERCPSRFCNSSNLLQHIKYHDAVRSNMCTYCGKGFITKTDLNIHEKQHLNRREYRCDDCGKCFNTHKDIRSHKLVVHTDSSTWKYCCKVCFKRFPIKSNYDSHMRRHTGDKKFVCHICERKFTDKCVLQRHMRTHSNVREFKCQHCDKEYKDHRVMRVHMAKIHGIGIGEIKLPTKERKYICHICPKAYYAKNKLTRHLYTHSGEKPYGCEICGKKFNDKSYVKQHLRKAHNLDEIPPDYEDNKINLNGLSQQEGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -