Basic Information

Insect: Diaprepes abbreviatus
Gene Symbol: -
Assembly: GCA_034092305.1
Location: JASJET010000043.1:8535542-8547426[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.11 15 7.9 2.7 1 20 227 246 227 251 0.92

2 12 0.07 9.9 8.5 5.1 1 23 257 279 257 279 0.99

3 12 2.2e-06 0.00031 22.7 3.7 2 23 286 307 285 307 0.97

4 12 0.00048 0.068 15.3 3.8 1 23 313 335 313 335 0.98

5 12 0.00088 0.13 14.5 1.9 3 23 342 362 341 362 0.99

6 12 0.0056 0.79 11.9 0.6 1 23 379 401 379 401 0.97

7 12 2e-05 0.0028 19.6 0.6 1 23 406 429 406 429 0.96

8 12 1.4e-06 0.0002 23.2 1.9 1 23 434 456 434 456 0.98

9 12 0.0015 0.21 13.8 1.9 1 23 462 484 462 484 0.98

10 12 0.0058 0.83 11.9 5.7 1 23 490 512 490 512 0.99

11 12 0.00045 0.064 15.4 0.2 1 23 518 540 518 540 0.96

12 12 0.00011 0.016 17.3 1.8 1 23 546 568 546 568 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.11	15	7.9	2.7	1	20	227	246	227	251	0.92
2	12	0.07	9.9	8.5	5.1	1	23	257	279	257	279	0.99
3	12	2.2e-06	0.00031	22.7	3.7	2	23	286	307	285	307	0.97
4	12	0.00048	0.068	15.3	3.8	1	23	313	335	313	335	0.98
5	12	0.00088	0.13	14.5	1.9	3	23	342	362	341	362	0.99
6	12	0.0056	0.79	11.9	0.6	1	23	379	401	379	401	0.97
7	12	2e-05	0.0028	19.6	0.6	1	23	406	429	406	429	0.96
8	12	1.4e-06	0.0002	23.2	1.9	1	23	434	456	434	456	0.98
9	12	0.0015	0.21	13.8	1.9	1	23	462	484	462	484	0.98
10	12	0.0058	0.83	11.9	5.7	1	23	490	512	490	512	0.99
11	12	0.00045	0.064	15.4	0.2	1	23	518	540	518	540	0.96
12	12	0.00011	0.016	17.3	1.8	1	23	546	568	546	568	0.96

Sequence Information

Coding Sequence: atgaataaatatgaaatattgcCTTCCAGTTCTTTCCAAAATATTTGTCGGACATGTTTGATGCAtgatgaattgtttttaattcatgAAGTAAGCTGGGAAGGCATAGGTTTAAGAGAAATAATACAGGATTGGACACCCTTACAGcTTACCAGTGATGAACAGTTACCACAAAATATGTGTAAAGATTGTGTAAAATGTATGTATCAGGCATACCGTTTTATGTCAAAATGTAAAAgatcagagaaaattttaaaaaatattttattaaaagaatcaataaaaGATGAAGTGGACAACTCAAAGATAGAATTAACAAAAGCGGATGAACaaaccgaaagtaaaaatgtCAATTCTGATATTGACATGGATAATTTAGCTGACAGTAGTGATCAGTATATGGAGGAAAGTTTTTTAGATAATCCTGATGATAATTATTCTGACATTGATGATCCAACTGGAGTTAAAAGTGAAATCTCTAATAATGAAGAGCAAACTGAGGACACAAATCCTGAtagtaatatattaaataagataCAAAGTATTAAGAATCAAATAAGTAAAATTAGAGTAAAGAATAAAGTTAGATTGCGACAGATGGCTAAAGCACAATTAGTGGATTATAGTGATTTACCAAAAAGTCATAAAAGGGCTTATGTAGTTAGAAAAGGTCCGCCTTATACTTGTGTTACGTGTGACTCATCTTATCAAACCCACGAAGAACTGAAAAAACACAAAACcgaaacaaaacataaaaaatctcTTAGGTTTAAATGTCCGCAttgtgaaagaaaatatgacgcTTATTGTAAGTATGAAGAGCATGTGAGAACTCATACAGGGGAAAAACCAAATAAATGTCCTACTTGtggtaaatgttttaattttaaaactgaccTAAAAAGACATATGGTAATGCATATGGAAATTAAACCGTATAATTGCCGATTTTGTAGCAAagGATTTACTAGAAGACAGTACCTTAGGGACCACGAGAGAAAACATACAGGGGAAAAACTACTTTGTCCGTTTTGTGGAAAAGGCTTTCACTCATATTCAACTTTATCTTATCATGAAAAGACTCATAAGGGACCACCTGGATGCATTCGAGACCCAATGGCGAAAGATCGgttatttcaatgtcatatatgtgataaagtTTTACTGACTGATCAAACTTTAAAAGCCCACATTTTATTACATGGACCTCGAAATTTTAGTTGTGAAATCTGTGGAAAAACTTACATTAGTAAAAATCGGTTACAAGATCATATTAAATTAACCCACCAAGaaaacaaatattCCTGTCATTTATGTGATAAAGAATATAAGCAAAAGAGTGGCTTGGAAGTTCACTTGAGATCACATTCTGGCCAAAATAATTATCCATGTGAAACATGTGGCAAGCAATTTGCATGTAAAGGTTCATTGTATCAACATAAAAGGGTGCATACAggTGACACAAAGTATCAGTGCAAAGAATGCCTTCATATTTGTATTAATAAGCGCCATCTGGAAAATCACGTACGTATTCACACCGGAGAAAAGCCTTTTGCTTGCGTGTTTTGTGGGAAACTTTTCGCACAAAAAGCAAATATGCAAGCGCACTCAAAGATCCACACTGGAGAAAAGAATCATATATGTAAATTGTGCGAAAAAGCCTTTTATGATACGCGAGGATTGAAGAAACACATGAGTATTCATGAAAAGAATGGCGATGAAGAAAATATGGTGTAA
Protein Sequence: MNKYEILPSSSFQNICRTCLMHDELFLIHEVSWEGIGLREIIQDWTPLQLTSDEQLPQNMCKDCVKCMYQAYRFMSKCKRSEKILKNILLKESIKDEVDNSKIELTKADEQTESKNVNSDIDMDNLADSSDQYMEESFLDNPDDNYSDIDDPTGVKSEISNNEEQTEDTNPDSNILNKIQSIKNQISKIRVKNKVRLRQMAKAQLVDYSDLPKSHKRAYVVRKGPPYTCVTCDSSYQTHEELKKHKTETKHKKSLRFKCPHCERKYDAYCKYEEHVRTHTGEKPNKCPTCGKCFNFKTDLKRHMVMHMEIKPYNCRFCSKGFTRRQYLRDHERKHTGEKLLCPFCGKGFHSYSTLSYHEKTHKGPPGCIRDPMAKDRLFQCHICDKVLLTDQTLKAHILLHGPRNFSCEICGKTYISKNRLQDHIKLTHQENKYSCHLCDKEYKQKSGLEVHLRSHSGQNNYPCETCGKQFACKGSLYQHKRVHTGDTKYQCKECLHICINKRHLENHVRIHTGEKPFACVFCGKLFAQKANMQAHSKIHTGEKNHICKLCEKAFYDTRGLKKHMSIHEKNGDEENMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01239433;
90% Identity: -
80% Identity: -