Dabb030293.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000118.1:470074-471234[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7e-05 0.0099 17.9 3.6 2 23 36 57 35 57 0.96 2 11 0.027 3.9 9.8 0.1 1 23 78 100 78 100 0.98 3 11 0.14 20 7.6 0.1 2 23 105 126 104 126 0.94 4 11 0.87 1.2e+02 5.0 1.3 2 23 133 157 132 157 0.79 5 11 5.1e-06 0.00073 21.5 3.1 1 23 163 185 163 185 0.98 6 11 0.00018 0.025 16.6 0.4 1 23 191 214 191 214 0.96 7 11 0.019 2.6 10.3 1.0 2 20 226 244 226 246 0.94 8 11 6.2e-05 0.0089 18.1 0.2 1 23 260 282 260 282 0.95 9 11 4.5e-07 6.3e-05 24.8 1.3 1 23 288 310 288 310 0.98 10 11 0.00011 0.016 17.3 2.0 1 23 316 338 316 338 0.99 11 11 0.0001 0.014 17.4 0.8 1 21 344 364 344 365 0.95
Sequence Information
- Coding Sequence
- atgaaactctTTCAGCAACATAAGGTAAAAAGTGATTGTATTTTCATAACAGTGGATATCAAAAACAACAAAGCACCCAAAAAGGACAGACTGCCGAAATTATGGTCATGCAAGTATTGTCACGAACCTTTCAAAACTCAAAAGCTTTTGCGAGATCATAAGAAATCTCACAGAGCTGAAGACATCCAAGAAGAAGAACCTTCCTATAAATTCGATGAAATTCAAGATCTATACATCTGCCAGGTATGCTCCGCAGAATTTCAAAAACAAAGTGAAGCTGAAGAACATGTGAAAAGCCACGTACCTGGAATAAAATGTAACGATTGCGAAGAATGGTTTAAATCGCCTTTTGATCTAGGAATGCACTCAATCAGTCATAGCgacaacaacaaaataaaatgccCTCTATGCAAATACGTTAGCAAAAGTACAAATCCTTATAGTTTTAAAGCTCATCTAAATTACATGCACTTAAAGAAGTTTCCTTTTTACTGCAAAGAATGTGGCAAAGGTTTCAAGCAATACAAAACTTACCAAGAGCACCAGAATACTCACACCGGTACTAAACCTTTCGTATGCGTGGTATGCGAAAAATCATTCACCTTTGAAAAATACTTAGTAGTACATCAAATCAGAAATCACCAAGTTGGCACTACAGGAAACAGAATTGAAAACGAATGCCGAAGATGCCATAGGTACTTTAAAAACAGAGAATTGATGCAGGAACACATGGACGAGTGTTTTCAGAAGAGGAAACAATCGAAGAAACCGAACTCCTTCTTATGTGATACGTGTGGACAGGGCTTTATAGAAAAAGCAAAACTCCTTAAGCATATTAGAGTTCACGTCGGCGACCTTCCATTCTCTTGTAAGTGGTGTGgtaaaaaatttccgcaaaaagaCTATCTGAAGACTCACGAACGAGTTCATACCGGCGAGAAACCATATTCGTGTGAATTTTGTGGGAAACGTTTCGGTTTTCATGCGCCCTTCAGGGTTCACATTAGGACACACACGGGAGAAAGGCCGTATgtttgtaatttttgtgataaaggCTTTACGACCAACCAAGGGTTAAAACTCCACAAAAAGAACTGTCCCGAAAATCAGTTAAATAAAATGCTGAGTGCGGAAAGTTCGAGTTATTTGATCATGAAATGA
- Protein Sequence
- MKLFQQHKVKSDCIFITVDIKNNKAPKKDRLPKLWSCKYCHEPFKTQKLLRDHKKSHRAEDIQEEEPSYKFDEIQDLYICQVCSAEFQKQSEAEEHVKSHVPGIKCNDCEEWFKSPFDLGMHSISHSDNNKIKCPLCKYVSKSTNPYSFKAHLNYMHLKKFPFYCKECGKGFKQYKTYQEHQNTHTGTKPFVCVVCEKSFTFEKYLVVHQIRNHQVGTTGNRIENECRRCHRYFKNRELMQEHMDECFQKRKQSKKPNSFLCDTCGQGFIEKAKLLKHIRVHVGDLPFSCKWCGKKFPQKDYLKTHERVHTGEKPYSCEFCGKRFGFHAPFRVHIRTHTGERPYVCNFCDKGFTTNQGLKLHKKNCPENQLNKMLSAESSSYLIMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01244510;
- 90% Identity
- -
- 80% Identity
- -