Basic Information

Insect: Diaprepes abbreviatus
Gene Symbol: -
Assembly: GCA_034092305.1
Location: JASJET010000398.1:650327-676694[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.5 5e+02 3.1 0.9 13 23 28 38 25 38 0.89

2 11 3.8e-05 0.0055 18.7 1.3 1 23 44 66 44 66 0.98

3 11 4.8e-05 0.0069 18.4 0.7 1 23 72 95 72 95 0.95

4 11 0.009 1.3 11.3 3.5 1 21 101 121 101 123 0.95

5 11 0.00014 0.02 16.9 1.9 1 23 129 151 129 151 0.99

6 11 5.9e-06 0.00084 21.3 0.6 1 23 157 179 157 179 0.99

7 11 0.00037 0.052 15.7 1.4 1 23 187 210 187 210 0.97

8 11 6.8e-05 0.0096 18.0 2.3 2 23 217 238 216 238 0.96

9 11 0.0021 0.3 13.3 0.3 1 23 244 266 244 266 0.98

10 11 1.4e-06 0.0002 23.3 1.8 1 23 272 295 272 295 0.96

11 11 4e-07 5.7e-05 25.0 1.8 1 23 309 331 309 331 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.5	5e+02	3.1	0.9	13	23	28	38	25	38	0.89
2	11	3.8e-05	0.0055	18.7	1.3	1	23	44	66	44	66	0.98
3	11	4.8e-05	0.0069	18.4	0.7	1	23	72	95	72	95	0.95
4	11	0.009	1.3	11.3	3.5	1	21	101	121	101	123	0.95
5	11	0.00014	0.02	16.9	1.9	1	23	129	151	129	151	0.99
6	11	5.9e-06	0.00084	21.3	0.6	1	23	157	179	157	179	0.99
7	11	0.00037	0.052	15.7	1.4	1	23	187	210	187	210	0.97
8	11	6.8e-05	0.0096	18.0	2.3	2	23	217	238	216	238	0.96
9	11	0.0021	0.3	13.3	0.3	1	23	244	266	244	266	0.98
10	11	1.4e-06	0.0002	23.3	1.8	1	23	272	295	272	295	0.96
11	11	4e-07	5.7e-05	25.0	1.8	1	23	309	331	309	331	0.96

Sequence Information

Coding Sequence: atgaaaCAGATTTCTATTGAACAGCGGAGAGCTATCTGTATTTTGAGCAATGAAGGATATTCTTACGCCAAATTGCAAAAAAGGTACCTTTTATCGAGACATATGAAGTCCCATTCGGAAGAAAGACCTCACAAATGTAGTGTGTGTGAACGAGGCTTTAAAACAATTGCCTCTCTGCAAAATCACGTGAATACTCACACCGGGACCAAACCTCACGCTTGCAAATATTGTGAAGCTGCCTTTACTACGTCAGGTGAATTAGTGCGACACGTTCGTTATCGTCACACGCACGAGAAACCCCACAAATGTACAGAGTGCGACTACGCCAGCGTGGAACTGTCGAAACTGAAACGCCACATTCGCTGTCATACTGGAGAACGGCCCTATCAATGCCCTCATTGTACCTATGCAAGTCCTGATACATTTAAACTGAAAAGACACTTGAGAATCCATACGGGAGAGAAACCGTATGAGTGCGAGATTTGCACAGCCAGATTCACGCAGAGTAATAGTTTGAAGGCTCACAGGTTGACACATAATAttggaGATAAGCCTGTTTTCCAGTGCGAGCTCTGTCCGACTACCTGCGGCAGAAAAACGGATTTAAGAATCCACGTACAGAAACTTCACACTTCTGATAAACCCCTGAAATGCAAAAGATGCGGGAAATCGTTCCCCGACAGATATAGTTATAAActcCACAGTAAATCTCATGAAGGCGAAAAATGCTTCAAGTGTGATCTTTGTCCCTATGCTTCAATCTCTGGAAGACATCTCGAGTCTCATATGCTCATACACACAGATCAGAAGCCCTACGAGTGTGAGATGTGTGATCAGTCTTTCAGgcaaaaacaacttttaaaaaggCATCAGAATTTGTATCATAATCCCGAGTACGTTCCACCGCAGCCTAAAGAAAAGACTCACGAGTGCCCTGAGTGCTCAAGAACATTTAGACATAAAGGTAATTTAATTAGGCATATGGCTGCTCACGATCCAGATCCCGTAATTCAAAGAAAGCAACTAGAATTGAAGTTGGGTAGGCAGAAAAAGATCCAGATGATAGACGGACAGCAGgttgagGTTTTGGGTCCAGGTTTAGGATCCGATGAAGAAGAAGAGATCGATATGATGGCTGTAGAAGGCTCTGATGGACAACAGTATGTCGTCTTGGAAGTCATACAATTAGCAGACGGGGAAGAACAGGCCATGGTAGTTGGACCTGAAGGCGGAGGAGAGGGAAATATTATGGGAATGGATGGGGTCATGCAAAACGGAGAACTAGATGAAGATGTAATCAAAGCGCTCCAGTCCGCTAGAAGAATTgagaaacaggaagaagaagacgaGAAAAAGCCGATAATTCTCAGCCCAGAGACGGATATGCAAAATTGTTTCGGATTTGATgAAGAAGAAGAGGATGAACAAAGAGAAACTCTAACCTTACTCTCGAGCATAGACTGA
Protein Sequence: MKQISIEQRRAICILSNEGYSYAKLQKRYLLSRHMKSHSEERPHKCSVCERGFKTIASLQNHVNTHTGTKPHACKYCEAAFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECEICTARFTQSNSLKAHRLTHNIGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHSKSHEGEKCFKCDLCPYASISGRHLESHMLIHTDQKPYECEMCDQSFRQKQLLKRHQNLYHNPEYVPPQPKEKTHECPECSRTFRHKGNLIRHMAAHDPDPVIQRKQLELKLGRQKKIQMIDGQQVEVLGPGLGSDEEEEIDMMAVEGSDGQQYVVLEVIQLADGEEQAMVVGPEGGGEGNIMGMDGVMQNGELDEDVIKALQSARRIEKQEEEDEKKPIILSPETDMQNCFGFDEEEEDEQRETLTLLSSID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00444411;
90% Identity: iTF_00444411;
80% Identity: iTF_00444411;