Dabb005900.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000022.1:30232635-30267663[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.7 6.6e+02 2.7 1.3 3 21 151 169 149 170 0.93 2 17 0.038 5.4 9.3 2.6 1 23 182 204 182 204 0.96 3 17 0.0048 0.68 12.2 6.6 1 23 210 232 210 232 0.98 4 17 4.6e-05 0.0066 18.5 1.1 2 23 255 276 254 276 0.97 5 17 0.0024 0.34 13.1 0.3 1 23 296 318 296 318 0.96 6 17 0.00034 0.048 15.8 4.2 1 23 324 346 324 346 0.97 7 17 6.3e-06 0.00089 21.2 2.0 1 23 354 376 354 376 0.98 8 17 0.91 1.3e+02 5.0 4.2 1 13 382 394 382 398 0.89 9 17 0.033 4.7 9.5 2.0 2 21 544 563 544 564 0.93 10 17 0.0026 0.37 13.0 0.8 1 23 576 598 576 598 0.98 11 17 0.54 77 5.7 1.8 1 11 604 614 604 626 0.79 12 17 4.1e-05 0.0058 18.7 0.1 2 23 649 670 648 670 0.97 13 17 8.8e-05 0.012 17.6 0.5 1 23 693 715 693 715 0.95 14 17 0.00011 0.015 17.3 3.6 1 23 721 743 721 743 0.97 15 17 5.7e-05 0.0081 18.2 3.3 1 23 751 773 751 773 0.99 16 17 6.6e-05 0.0093 18.0 5.4 1 23 779 801 779 801 0.98 17 17 7.7e-05 0.011 17.8 1.8 1 23 807 831 807 831 0.92
Sequence Information
- Coding Sequence
- atgaaaatatcttATAAAGATTTCAATTTATTGTGTCGTCTATGTTTAAACAGAAATGATTTTTCTATATCTGTGCTTCAAGAAAATGTTGTAACACTTCTGAATAACCTGGGTGTTCGTATTCAGGTAAATGAAGTTGATGAACTACCACAAAACATCTGCAGTAAATGTGAAAAACACATTgacaaaatttttacatttatagcTGAATGTAAGAAAAGTTACATCATTTTAGAGTCTATTTTGTCCcaggaaaagaaaattaaaaatgaatctgaaaaatataatggTTCATTTGATATTTCTAATGATATTGGGATTATAAGTAACTATCAGGAAACAAAGGCAGAAACcattattaaaaatgattttacagaaaaaaattcaACAGAAAATTCAATAAGCTCCACTAACATTAACAAATTTGAAGCTAGTAAAACAAATATTGCTTGTGGGAAATGTAATATTTTGCTGAAAACTCGGTTGTGTTTAAATAgacattataagaaaaatatagaatgcAGACCacttaattttaaactttataaGTGTGAACATTGTGATAAAGAATTCTTAAATTTGAGAGATAAAACTGAACACAGAAATATTCATACAGGAGAAACTCCATATAAATGCACATactgtataaaagaatttaaatttaaaacaaatttacataAGCATATCTACAGACATAAACTAAAACTTGGCTTAGTAGATAAAAAAGAATCCTATAGAGAAAAACGAGtaaaacttaaactaaaatgCAATGAATGTGAAAAAGTGTTCGCTAGTCGATCTGGATTTCAACAACATAAATTAAAACATGAAGGGAAGATTTTACTTAGAAAACATGAAGTGAAACTTGATAAAAATGTTAAGGATTATTTGTGTAATTATTGCGCCATGAGTTTTTATATTAAAGCTAATTTGGATACCCATTTGAGGGTTCATACTGgcgaAAGACCTTACAAATGTACCCATTGCGACcagcaatttaaacaaaaaagtgtTTTAGATCGACACACTTTAAACCATTTAGATGTTAGACCTAAACCATTTGTATGTGATGTGTGCCAAAAGAGTTTTACAACTAAAGCACATATGGAAATACATAGAAGGTTGCATACTGGAGAAAGACCTTATGAGTgccatttttgtcaaaaatgttttaattataggACACGTTGGAGAataccTGAAAATGATCAACTTCCCAAAAATATTTGTGCATCTTGTTTGAAATGCCTCGAAGAAATCACAAGATTTGCAGCAAAATGTAAAGCAAATAATGCAATTTTAACATTAGTTTTAGAGACTGAAGAAAAAGAAGCTAAGTTAAAAAAGTTAGACTTTGATTTAGATTTGGATGATGATCTCGATAATTATAGTTCttatgaaaattatgttaaatctGAAAGTGAATATGAGGATTCTTCTTGTGTCCCAACTAAGGAGGGGATTGAAGAACCTGATGATGAACTACCCAATAAAAGAAAACGCCGACGGAAAAGAAAAAATTCGTTAGTAGAACAGAAGCCTTTAAAGTTACGTGGTAGAAAAAGAGGAAGAAAACCGAAAGTAGTGCAAAGTGATGATGAAGATGAAAAATCAAACAGTGAGATTCCAGTTTGTAAGGCATGCGGTAACACTTTTACTAGCAAAACGAAACTATGTTCTCATTATAAggaaaacaaaagttgtagaccaAGGAATTTTAGACTATTTAAATGTGAAGTTTGTGAAAAAGAATTCTCAACTATTCGACGTCGTAACGAACATATGAATATTCATACAGGTGAGACACCATACATTTGTACCTATTGTGGAAAAGGTTTTCAATTATACCCAGCCCATTTTAAACATGTATATCGACATCGATTAGCTTTGGGGGAGGTAGAACTCAAACCTGGATATATGGAAAAAAGAGTGAGGTTAAATCTGAAATGTGAATTATGTCCGAAAGTATTTGCTAGTAGATCTGGTTTTGCGAATCATCAACTTATACATCAAGGAGTAAAAATACAGTACAAAAAACGACCAAAAAAGGAGGAAGAGGGaccgaagttaaaaaattttctctgcaattattgtgcaaaaagtTTTAGAACGAAAGCACAACTTGATGGGCATATTCGAGGACACACAGgtGAAAGACCATTTAGCTGTGCTTACTGTCATAAATTTTTCAAAACGAAAGCAGCTTTAAAAACGCATGAAATGAACCACCTAGGAACTACACCACAAAGGTTTAAATGTGAAACCTGCAATAAACCGTTTTCACTTAAAGCACATTATGAAGTACACAAAAGGACGCACACTGGCGAAAAACCATTTGAATGCCACTTTTGTggcaaatgttttaattatagagGAACTTGGAGGATTCATCTCAGAATGCATACAGGCGAAACGCCATACGCCTGCCCAATATGTGGCAATAGATACCACGACAAAAGTAGTTTAAATAAGCATCAAAAGAAGAAAGGACATTTAGGTGAAGCTATTGTTCAAGAAAAACTTCTATTATGA
- Protein Sequence
- MKISYKDFNLLCRLCLNRNDFSISVLQENVVTLLNNLGVRIQVNEVDELPQNICSKCEKHIDKIFTFIAECKKSYIILESILSQEKKIKNESEKYNGSFDISNDIGIISNYQETKAETIIKNDFTEKNSTENSISSTNINKFEASKTNIACGKCNILLKTRLCLNRHYKKNIECRPLNFKLYKCEHCDKEFLNLRDKTEHRNIHTGETPYKCTYCIKEFKFKTNLHKHIYRHKLKLGLVDKKESYREKRVKLKLKCNECEKVFASRSGFQQHKLKHEGKILLRKHEVKLDKNVKDYLCNYCAMSFYIKANLDTHLRVHTGERPYKCTHCDQQFKQKSVLDRHTLNHLDVRPKPFVCDVCQKSFTTKAHMEIHRRLHTGERPYECHFCQKCFNYRTRWRIPENDQLPKNICASCLKCLEEITRFAAKCKANNAILTLVLETEEKEAKLKKLDFDLDLDDDLDNYSSYENYVKSESEYEDSSCVPTKEGIEEPDDELPNKRKRRRKRKNSLVEQKPLKLRGRKRGRKPKVVQSDDEDEKSNSEIPVCKACGNTFTSKTKLCSHYKENKSCRPRNFRLFKCEVCEKEFSTIRRRNEHMNIHTGETPYICTYCGKGFQLYPAHFKHVYRHRLALGEVELKPGYMEKRVRLNLKCELCPKVFASRSGFANHQLIHQGVKIQYKKRPKKEEEGPKLKNFLCNYCAKSFRTKAQLDGHIRGHTGERPFSCAYCHKFFKTKAALKTHEMNHLGTTPQRFKCETCNKPFSLKAHYEVHKRTHTGEKPFECHFCGKCFNYRGTWRIHLRMHTGETPYACPICGNRYHDKSSLNKHQKKKGHLGEAIVQEKLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -