Dabb030321.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000118.1:828953-830691[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.48 68 5.9 1.9 1 23 50 72 50 72 0.95 2 13 0.0012 0.17 14.0 2.8 2 23 79 101 78 101 0.95 3 13 0.00019 0.027 16.6 2.2 1 23 107 129 107 129 0.98 4 13 0.0011 0.15 14.2 0.7 3 23 137 157 136 157 0.97 5 13 8e-05 0.011 17.8 2.4 1 23 163 186 163 186 0.96 6 13 0.096 14 8.1 6.3 1 23 195 217 195 217 0.97 7 13 1.5e-05 0.0021 20.1 1.9 3 23 226 247 224 247 0.93 8 13 5.1e-05 0.0072 18.4 0.3 2 23 253 274 253 274 0.97 9 13 0.032 4.6 9.6 0.1 5 23 285 304 283 304 0.88 10 13 0.00011 0.016 17.3 2.0 1 23 311 333 311 333 0.97 11 13 5.4e-05 0.0077 18.3 2.8 1 23 339 361 339 361 0.99 12 13 2.4e-05 0.0034 19.4 0.4 1 23 369 391 369 391 0.98 13 13 1.2e-06 0.00017 23.5 0.1 1 23 397 420 397 420 0.98
Sequence Information
- Coding Sequence
- ATGGATTCATTAAGAGCCTCGAGTGTTGGTCATACCAAggaaatagtAAGAATTGTTGTTATCGAAGACAGCGAACAGACTGCACAATCGGAAGAACCATCGTCACCAGAAGACACCAAAATTATTGTTCATCAAACTTCCGAAGGCTATCACTGTCCTTACTGCCCACTTGTCATGAAATTTTTATGCAGACTAAAAGCACACTTAGTAGTTCACAATGCCATACGACATCTGGAATGtacaatatgtaaaaaaacttttaaacacaaacgGGTACTAGATTATCACGAAAAAACTGTACACGGTGAGCCAGAAAATTATCAATGTGAAGTATGCGAAAAAGTGTTTTCGAACAAAAGAAATTGTATAGTCCATGCTAAAAGACATACAAAAGAGTATAGTGTATTTTGTAATGTTTGTGGTAAAGGTTTTTATGCGGGACACTACTTAAGGAAACATATGGTAATTCATAGTGAGGAAAGACCATTTGAATGTCCTGTTTGTAAAAAGGCTTTTAAACATAAAGCTTATTTTGATTATCATATAAAGAATTTACATAACGTAGATTCTGATTCAGATAAATATTGTTGTGGTTTTTGTGGAAAACAATTCAATACTCAAAGGCTATGCATTAATCATGAAAAAACACACGAACCGAAAGAGTACACGGTATGTTGCGAAGTGTGTGGAAAAACGTTTTTCAACAATTATGGACTGAAGAAACATTTAAAAGCAAATCATTTAGGTATACGAGAAACCTGTGAAATATGTGGCACCAGCTTGGGAAATAAAAACAGCCTTAAAGCCCACATGAAGCTCCACGACTCGAGTTACCTAAAACCTCCTCCAGAAAAATGTGATATCTGCCTCAAAACCTATTCTAATCTTGCCATTCATTACAAAGCTGTTCACGAAAATAATGGCAAAAACTTTGAATGCCCAATTTGCGGAAAATTTTATTCACATAAAAACGGATTAAAGTTTCATATGATATATCATAGAGATAAAAAGCCATTTAAGTGTGAATTTTgcgaaaaaagttttattttgagGACCTTTTTGACCCAGCATCTCAGAACTCACCCGGAAAGTGGAGTGAAACCTTTTGAATGCGATATTTGcggaaaaaattttgttaaaaaatatgtgtttatagATCACCAAAATGTGCATACTGGCGTTAAACCATATGAATGTGAGCTGTGCGGAAAGGCATTTACTGGAAGGAAGAATCTTGGTGAACACATGCGTGTTAACCACGCGGTTAGACGCAAGGATATTAacgctaattaa
- Protein Sequence
- MDSLRASSVGHTKEIVRIVVIEDSEQTAQSEEPSSPEDTKIIVHQTSEGYHCPYCPLVMKFLCRLKAHLVVHNAIRHLECTICKKTFKHKRVLDYHEKTVHGEPENYQCEVCEKVFSNKRNCIVHAKRHTKEYSVFCNVCGKGFYAGHYLRKHMVIHSEERPFECPVCKKAFKHKAYFDYHIKNLHNVDSDSDKYCCGFCGKQFNTQRLCINHEKTHEPKEYTVCCEVCGKTFFNNYGLKKHLKANHLGIRETCEICGTSLGNKNSLKAHMKLHDSSYLKPPPEKCDICLKTYSNLAIHYKAVHENNGKNFECPICGKFYSHKNGLKFHMIYHRDKKPFKCEFCEKSFILRTFLTQHLRTHPESGVKPFECDICGKNFVKKYVFIDHQNVHTGVKPYECELCGKAFTGRKNLGEHMRVNHAVRRKDINAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -