Dabb043198.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000194.1:1052432-1054417[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00058 0.083 15.0 3.2 1 23 22 46 22 46 0.97 2 17 0.0014 0.2 13.9 0.2 1 23 64 89 64 89 0.97 3 17 0.23 33 6.8 0.1 1 20 106 127 106 131 0.91 4 17 0.0072 1 11.6 1.0 1 23 137 162 137 162 0.93 5 17 0.00014 0.019 17.0 0.2 2 23 171 195 170 195 0.94 6 17 0.0039 0.56 12.4 1.1 1 23 229 254 229 254 0.95 7 17 6.3e-06 0.0009 21.2 0.5 1 23 260 285 260 285 0.93 8 17 6.8e-06 0.00096 21.1 0.3 3 23 298 321 296 321 0.91 9 17 0.0024 0.34 13.1 0.3 1 23 350 375 350 375 0.93 10 17 0.00019 0.027 16.6 4.5 1 23 381 406 381 406 0.95 11 17 0.015 2.2 10.6 3.0 3 23 418 441 416 441 0.93 12 17 0.0023 0.33 13.2 3.0 1 23 446 469 446 469 0.90 13 17 0.00045 0.064 15.4 5.4 1 23 475 497 475 497 0.99 14 17 0.049 7 9.0 0.8 5 21 503 519 500 520 0.93 15 17 3.5e-05 0.0049 18.9 1.2 1 23 529 552 529 552 0.95 16 17 0.012 1.7 10.9 0.6 2 23 561 585 560 585 0.94 17 17 0.00048 0.068 15.3 2.6 1 23 624 648 624 648 0.95
Sequence Information
- Coding Sequence
- atgaACTTAAATGCAGACGACGAAATAAAACAGGCGTTCAAacgaaaatcaacaagaaagacATATAAATGTGAAAAAGATGGCTGCTCTAAATCATTTAGTAAACAACATGAGATTAAGAGGCATCGTCAGGCACATTTGAAAGGTACCCTCGGTAAAAGCACGAAGATATTGGTCGGTAAAAAGATGTACGAATGTGACGTAGCGGGTTGCAGCGAAGCATATACCAGACTATGGTCATTAACGCGTCACAAACAAAAGAAGCACGGTGATGGGCAGAATGATCTAAAAAGCAAGTCGGATGCTCCACGACGTTATAGATGTGAGGAACTCGATTGTGAAGCCTTTTTTATGCGAGCTGATCGACTTGAGGCTCATAAAGTAGCATTTCATTTTGGAGAACGACCATATAAATGTGATTTTGAAGGATGTGATAAAAGCTACAAAATCGACCCGCACTTAAAAAGACATAAGCTCGCAGCTCACTCTCCAGAAATAAGACCCGTTGTGTATTGTAAAATCAATGACTGCggcaaaatttattataataccTCTAGTCTTAAAACACACATAGCTACAGTACATACGCTCTCATTTCAAAAGAGCGAGGAAAATGAATATCAACAGGGCAGTATTGCTAAACCAATCAGTATTAAAAGAAAAGCCTGTGATGTTGAAAAGCGTCACCAATGTGATCAACCAGGATGCGACGCCGCATTCAGACGACCATATCGGctgaaatatcataaaataacGTTTCACGGCGGTGAAAAGCCATTTATTTGTGAAGAAGAAGGATGTggtaaaaaatatacgagtaatTCGCATTTGATGAGACATATATTGTTGATCCACAAAAGAGATGTCGCTGCTACAGAAATGAAACTGATTTGTGGCGTTGAGGGGTGTGGTAAAATATATTCTAATAAATATAGCCTTAGAAAACATATACGTAAGAAACATCCATATAGATTATTAAAGTTTGAAGAGTCTAATGATGATAGTCAAGGTCACAAGGAGGATAGATTCATTGAACTCGAAGGAAGCTATAAATGCGACGAAGAGGATTGTAATGCAGAATTCACACGCTCCGATCGACTGACATCTCATAAATTAGCTTTACATCGTGGCGAACGCCCATTTAAATGTGTTCACCAAGATTGCGGTAAAAGTTACACAAAACAGTCACATTTGGTAAGACATAAAGTCACCAGTCACGATCCACAAGGAACTATAGTGAAACAGGTGATGTGTAAATTGGACGGTTgcggaaaaatttgttttaacaacTGTAGTCTTCGGAAACATATAGCTAGAAATCATCAAGATTTTCCTTTTAAATGTATAGAGTGCGATGAAAAATTTAAACGCAAGTATCAACTTCACAAGCATGAAATCGAAACTCACGGCAGAGAAGCTTCATATAAATGTAACGAATGCCCTAAAATATTGGTGCACTACCATCAATTCAATAAGCATCTTAAAACCCACAAGATACATCAGTGCGATTGTGAAAAGACGTTTGGAAAATGGTCGAAGCTTTTGGTACATAGAAGGAATGATTGCACGGTTAAGTGGAAGGAACATAAGTGCCAAATTTGTGGTAAAGGATTTTCTTTAAAGTATAATCTTATGCTTCATTTTATAATGGTACACAAATCTGAGAGTCAAGTTAATTTAAGATGTCCTTATTTGAACTGTAAACAGTCGTATAAATATAAGTGGAACCTTGACTATCATATAGAGTCATATCATGAGGGAATGTTCCAAGAGAATTCTGAGTTAGATTTATGTGATAATGTGTCAGCGAAAATACAGGAAAATGAAGGAGTGTCGAGGAAGCGAAAATCGACTGGTAAAAAAAGAGTTCACAGGTGCGGAAGCGAAGGTTGTACTCGATCGTTTCGgacattaaacaaattaaagaaacacTTGCAAGTACATTTTAAAACTCTTAAAATCAAATCTGaaataactgaaaattaa
- Protein Sequence
- MNLNADDEIKQAFKRKSTRKTYKCEKDGCSKSFSKQHEIKRHRQAHLKGTLGKSTKILVGKKMYECDVAGCSEAYTRLWSLTRHKQKKHGDGQNDLKSKSDAPRRYRCEELDCEAFFMRADRLEAHKVAFHFGERPYKCDFEGCDKSYKIDPHLKRHKLAAHSPEIRPVVYCKINDCGKIYYNTSSLKTHIATVHTLSFQKSEENEYQQGSIAKPISIKRKACDVEKRHQCDQPGCDAAFRRPYRLKYHKITFHGGEKPFICEEEGCGKKYTSNSHLMRHILLIHKRDVAATEMKLICGVEGCGKIYSNKYSLRKHIRKKHPYRLLKFEESNDDSQGHKEDRFIELEGSYKCDEEDCNAEFTRSDRLTSHKLALHRGERPFKCVHQDCGKSYTKQSHLVRHKVTSHDPQGTIVKQVMCKLDGCGKICFNNCSLRKHIARNHQDFPFKCIECDEKFKRKYQLHKHEIETHGREASYKCNECPKILVHYHQFNKHLKTHKIHQCDCEKTFGKWSKLLVHRRNDCTVKWKEHKCQICGKGFSLKYNLMLHFIMVHKSESQVNLRCPYLNCKQSYKYKWNLDYHIESYHEGMFQENSELDLCDNVSAKIQENEGVSRKRKSTGKKRVHRCGSEGCTRSFRTLNKLKKHLQVHFKTLKIKSEITEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -