Dabb046344.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- PRDM13
- Assembly
- GCA_034092305.1
- Location
- JASJET010000215.1:869576-878584[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.003 0.42 12.8 0.3 1 21 274 294 274 295 0.93 2 11 4.9e-06 0.0007 21.5 0.9 3 23 343 364 342 364 0.95 3 11 2.7e-05 0.0039 19.2 2.9 1 23 377 399 377 399 0.98 4 11 2.2e-05 0.0032 19.5 0.6 2 23 406 427 405 427 0.97 5 11 1e-08 1.5e-06 30.0 0.5 1 23 432 454 432 454 0.98 6 11 2.6e-06 0.00037 22.4 1.8 1 23 460 482 460 482 0.97 7 11 3.5e-07 4.9e-05 25.2 0.9 1 23 488 510 488 510 0.98 8 11 0.0018 0.25 13.5 1.0 1 23 516 538 516 538 0.97 9 11 4.1e-05 0.0058 18.7 1.3 3 23 546 566 544 566 0.98 10 11 2.2e-05 0.0031 19.5 0.9 1 23 572 594 572 594 0.98 11 11 0.0025 0.35 13.1 7.3 1 23 600 623 600 623 0.98
Sequence Information
- Coding Sequence
- ATGAAGCTGGATAAAATTTGTAGGACATGCTTGTTTGAGAAAGCAAACCTAAAATCACTGTTTGATGCTTGTGTTCCTAACATGATCATGTCTTTTGCTTCTGTGCAGattattcAAGGGGATGGTTTGCCCCAACAAATATGTACACAGTGTATTAGAGACATAAacaaagcatacacattcaaaCAAACTTGCGAGAAGTCAGATGCTACCTTACGGCATTATATCAACAACATTAACTTTAACAGTGAAATCAGCCAGTTATGCGATATATCTTCTCAAATGACCAATAGTAACAGTATTATGCCCATAGATAATATAATTTCTAACTGTAATAGTGATCATCTCATTAATAGTTGTAATGTTATGACAAATAGCAACTTAATATCTAATAACAACATGGATATAATGTCTAATACCAACAATATGGGTTCTTCTATGGGTACATTAGCTAATTCGATCAATACTTCTttggatattttagaaaataatacattaaatcaaAATAACCTTATTGACATAGATAGTAATGTTATAAATACCTTTAATGCTGTAAGAAGCAATTTATTCAGTAATAGTGAGGTACTACAACAGAGTTCattttttcaagatatatttaacGATCCAACAAATCAGTCACTGGTTGATAACTTTACTAATAATCAGGCTAATGCAGTTGTATCAGATCTAGCCGAGACCATGCAGAGTTTGCAAACCATTGCAGAGCAGTGCTTACCTGCATCATGGGATAATGATAATCAGATATGTCCAATAAATACTGAAGAAACGTCCAATAGTTTTCCGTTAATAGATCATATATACAAATGTCAATTTTGTGGAGAAACATTTAAAGATGGTTGGTCATTAGATGAGCACACTAAAAGCCAAGTgtgtcaagaaaaatattttagtacgAATATAACCAATGAGTTAACAAAAAGTATGTTGTTAGAATATAGCTTTGATACTAACTCAAAGGATAATTTTATGTTTGAGAATATCGAGCCCACCAATCAAAACTTACTCTGTGatatttgtgataGAACATTTACTGatcaaaaatatctgaaaaaacatttaaaagatataCATTTCATAGATACAACATGTGTACAGgatgaaaaaaaacatacatgTACCCTGTGTGGTAAAAGATATAAATCCAACAAGGTACTGGTCCTTCACATGCGCACTCATACGGGAGAGCGACCCCTAAGATGTGAAATTTGCTCTCGCACTTTTGCTTTACCTAGTAGTCTGCAGAAGCACAAGAAGATTCACAAAGAAAGGCAGTATGAGTGTAATATATGTGGAAAGAAATTCAATCAGCAATCCAATTTAAATACCCATATACTGATACATTCTGgcgAAAAACCTCATATTTGCACAACCTGTGGTAAAAGATTTGCTACCAACACCAACTTGGAAATCCATAAAAGAATACATACAGGAGTCAAACCGTTTGTATGCAGTTTTTGTGATAAAGCTTTTATATcgAGCACTCAACTTAAAAAGCACATGATGGTCCATACTGGGGAAAAGCCTTATTCTTGTTGGATTTGTGGCCAatcctatagaagaaaagaaACAAGGGACACCCACGCGAGGTACCACACTGGAGAGAGACCATTTGGTTGTAAAATATGCGATAAGAAGTATATTGCTGCCTCACATTTAAGGgatcACATGAAGAGTCACAACACCGATCGAAAATTCGAGTGCATGGTATGCACGAAAAAATTTCCTTCTCTGAAAAACCTAAAAAGTCACATTTTGTCGCATACAGGGCAAAAACCATATACCTGTAGCTTCTGTGGCAAATGTTATTCGCTTAAAAAAGCCTTTAAGGTTCATTTAAAGTCTTGTCATAGTTAA
- Protein Sequence
- MKLDKICRTCLFEKANLKSLFDACVPNMIMSFASVQIIQGDGLPQQICTQCIRDINKAYTFKQTCEKSDATLRHYINNINFNSEISQLCDISSQMTNSNSIMPIDNIISNCNSDHLINSCNVMTNSNLISNNNMDIMSNTNNMGSSMGTLANSINTSLDILENNTLNQNNLIDIDSNVINTFNAVRSNLFSNSEVLQQSSFFQDIFNDPTNQSLVDNFTNNQANAVVSDLAETMQSLQTIAEQCLPASWDNDNQICPINTEETSNSFPLIDHIYKCQFCGETFKDGWSLDEHTKSQVCQEKYFSTNITNELTKSMLLEYSFDTNSKDNFMFENIEPTNQNLLCDICDRTFTDQKYLKKHLKDIHFIDTTCVQDEKKHTCTLCGKRYKSNKVLVLHMRTHTGERPLRCEICSRTFALPSSLQKHKKIHKERQYECNICGKKFNQQSNLNTHILIHSGEKPHICTTCGKRFATNTNLEIHKRIHTGVKPFVCSFCDKAFISSTQLKKHMMVHTGEKPYSCWICGQSYRRKETRDTHARYHTGERPFGCKICDKKYIAASHLRDHMKSHNTDRKFECMVCTKKFPSLKNLKSHILSHTGQKPYTCSFCGKCYSLKKAFKVHLKSCHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00196578;
- 90% Identity
- -
- 80% Identity
- -