Dabb030323.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diaprepes abbreviatus
Gene Symbol
ECU03_0790
Assembly
GCA_034092305.1
Location
JASJET010000118.1:835146-854729[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00095 0.14 14.4 5.0 1 23 53 75 53 75 0.97
2 20 0.00062 0.088 15.0 2.5 2 23 82 104 81 104 0.96
3 20 9.9e-05 0.014 17.5 1.9 1 23 110 132 110 132 0.98
4 20 0.0012 0.17 14.0 0.1 2 23 139 160 138 160 0.97
5 20 0.0074 1.1 11.6 3.6 2 23 167 189 166 189 0.96
6 20 0.0014 0.21 13.8 5.8 1 23 197 219 197 219 0.97
7 20 0.00083 0.12 14.5 2.4 2 23 226 248 225 248 0.96
8 20 0.00012 0.017 17.2 0.2 1 23 253 275 253 275 0.96
9 20 0.013 1.9 10.8 0.8 2 23 286 305 286 305 0.90
10 20 7.5e-05 0.011 17.8 1.2 1 23 312 334 312 334 0.98
11 20 2.5e-05 0.0035 19.3 2.6 1 23 340 362 340 362 0.99
12 20 2.8e-06 0.00039 22.3 2.2 1 23 370 392 370 392 0.98
13 20 0.0014 0.21 13.8 0.2 1 23 423 445 423 445 0.97
14 20 0.0066 0.93 11.7 2.6 3 23 453 474 451 474 0.95
15 20 6.4e-06 0.00092 21.2 0.2 1 23 481 503 481 503 0.97
16 20 0.45 64 6.0 0.2 2 12 515 525 514 527 0.89
17 20 1.2e-05 0.0017 20.3 1.3 1 23 541 563 541 563 0.98
18 20 6.8e-05 0.0097 18.0 4.0 1 23 569 593 569 593 0.95
19 20 2.3e-07 3.2e-05 25.8 0.3 1 23 599 621 599 621 0.98
20 20 0.011 1.5 11.1 0.8 1 23 627 650 627 650 0.98

Sequence Information

Coding Sequence
ATGTCCTGGACTCACCGTAATAGGAAAATTCCTGTAAAATACAAAACTAGAAAAAAATCGGAATATAATAACGGCGAGACTAATGACACTCAAGATGAATTGGAAATTATtggaaaagataatgaaaaaattactatCAAAAAAACTCCAGAAGGATATCGATGCCCATACTGCGATAAATATTTCCAACAACGCTGCAAACTCAAAAATCATTTCATAATTCACAGCTCAGACCGACCATGGAAATGTAACGTATGTGACAAGACTTTTAAGCATAAACGCGTCCTTGATTACCACGAAAAAACAGTGCATGGCGAACCCGAAAACTTCCCCTGTGATATATGTGGAAAAATTTTCAGCAATAAGAGAAACTGCATAGTTCATCGAAACAGGCATAGTAAGGAATATAGCGTCAGGTGTGATATATGTGGAAAAGGGTTCCTAGCGAACTTTTATTTGAAGAAACATATGATTGTTCACAGTGATGAGAGACCATTAAAGTGTACGGTTTgtgaaaaaacttttaaacatCAACGTGTTCTCGATTATCACTTCAAAACTCTTCATTCAAAGGAGAATTCCGAAAAGTATCCGTGCCATATTTGCGGCAAGTTTTTCACCACAAAAAGAAATTGCATTGTTCACAGCAAAAGACATCTTAAAGAATTTTCTGTTTACTGTGAACATTGTGGGAAAGGTTTCCTCAACAACTTTTACTTGAAGAAGCATTTAAATTCGAAGCATTATGGAAAGAGGCACATCTGCGACATCTGTGGAGCAAGCATAGGAGATAAAGGAAACCTCAAGAATCATATGAAGCTCCACGATCCCAATTATAAAAGACCTCCGCCTGAGAAATGCCCTCTTTGTAACAGAACATTTTCTGATCTTAAACGCCATTATAAAGCTGCACATGAAAACgatggaaaaaattataaatgtgaATACTGCGGAAAGTTCTTTAGAGGAAAAGATGGATTAAAGTTCCATCTGATGATCCATCGAGGAGAAAAACCATTTCAGTGTCAGTTTTGCgacaaaagttttattttaaatacttttttgcaGCAGCATCTTCGAACGCACCCTGAGAGTAATGTGAAACCATTTGAATGCTTGTATTGCGGAAAAACGTTTATAAAGAAAAGTCTTTTAGAACATCACACTAATATTCATACTGGTCAGCGTCCATTTGAATGGAGAAAGGTTTATCAGAGGAACTTAAACGTAAAGACTCAAATCGGAAAGGTAAAATTAAAAGAGGAATATCCGTGTGAAACCTGTGGAAAAGTTATCGCCAATAAAAAGTATTACGAATATCATTTACAGGGTCACAGAAAAGATTACAATATATTTTGCGAGTATTGTGGTAAAGGGTTTGTTTATAAACACCAACATAAAGTACATATGGAGATCAAGCATAGCGCAGTGGAGCAACGTTTTGTATGTGACGTTTGCGGTAAAGAATTTCCTTTGGCAAGTTATCTCAAACGACATCAAGTACGCCATGAAGAAAATCCCCAGAAAAAACTTCAGCCCACTGAATGTCCAATCTGTAAAAAATCTTACGTTAGAATCAATAGACATAATAGAGAATTTCATTCAAATGAAGGCGCTAGCTATATGTGTGATGTGTGTGGTCAAAAATTTCGTCAAAGCTTCGAATTGAAACTCCATACGATGCGTCACAAAGGAGAAAAACCTCACAAATGTTCATACGAGGCTTGTGATAAAAGTTTTGTCAGAAAACAGCATTTAATTTTGCATATGAGAAGTCATACCGGTGAGAAGCCTTATGAGTGTAAAATATGCGGTAAAACGTATACCCAGAAACCCACCCTGGTGGTGCATATGCGAGGACATCTGGGTGAAAGACCTTATGAATGTGATTTGTGTGTAAGCAAGTTTGCTTCGAAACAGCGATTAAATATTCACCGAAGAAAAGTCCATAAACTTATAGTTGTTAGTGATAGAACTTTATTAAAAGCAAAGAATTCGTTTTGA
Protein Sequence
MSWTHRNRKIPVKYKTRKKSEYNNGETNDTQDELEIIGKDNEKITIKKTPEGYRCPYCDKYFQQRCKLKNHFIIHSSDRPWKCNVCDKTFKHKRVLDYHEKTVHGEPENFPCDICGKIFSNKRNCIVHRNRHSKEYSVRCDICGKGFLANFYLKKHMIVHSDERPLKCTVCEKTFKHQRVLDYHFKTLHSKENSEKYPCHICGKFFTTKRNCIVHSKRHLKEFSVYCEHCGKGFLNNFYLKKHLNSKHYGKRHICDICGASIGDKGNLKNHMKLHDPNYKRPPPEKCPLCNRTFSDLKRHYKAAHENDGKNYKCEYCGKFFRGKDGLKFHLMIHRGEKPFQCQFCDKSFILNTFLQQHLRTHPESNVKPFECLYCGKTFIKKSLLEHHTNIHTGQRPFEWRKVYQRNLNVKTQIGKVKLKEEYPCETCGKVIANKKYYEYHLQGHRKDYNIFCEYCGKGFVYKHQHKVHMEIKHSAVEQRFVCDVCGKEFPLASYLKRHQVRHEENPQKKLQPTECPICKKSYVRINRHNREFHSNEGASYMCDVCGQKFRQSFELKLHTMRHKGEKPHKCSYEACDKSFVRKQHLILHMRSHTGEKPYECKICGKTYTQKPTLVVHMRGHLGERPYECDLCVSKFASKQRLNIHRRKVHKLIVVSDRTLLKAKNSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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