Basic Information

Gene Symbol
Trerf1
Assembly
GCA_034092305.1
Location
JASJET010000256.1:794695-882492[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1e-09 3.6e-06 28.7 0.1 2 46 1100 1144 1099 1144 0.96

Sequence Information

Coding Sequence
ATGTCACCGGAACCGAAaggaaaaaggcctaaaacaaaaccAACATCTCCCAACAGACAGGGTCCTCAACAATGTCaggtGTGTTCAAAAGTATTTGGAAATGCATCGGCGCTGGCAAAACACAAGCTAACGCACAGTGATGAAAGAAAATACATTTGCAACGTTTGTAATAAAGCATTCAAAAGACAAGATCATTTaAATGGTCACATGCTTACTCACCGCAATAAAAAACCATACGAATGCAAAGCGGATGGTTGCGGCAAAAGTTACTGTGATGCAAGGTCGCTTCGACGGCACACAGAAAATCACCACGTTTCACCTACTACGTCCAATAGTTCCACAACGATGTCGCCTGCTCAGGGGGCTGCAGCAGGTGACGCCGCTTCGCCACATGGTAGTAGTTGTATACAGTACGCACCGCCACCAAGTGGGTCTCCGACTATGAAAGACAGTGGGTGTAAAGAGGGAAAAAGTCAGCTGCAGCAGCTTTTATCAACTGAACCAgctaagAATACCGGAGGTAACAACGATGGTCTGACAAAGCAACAACTTGATCTCATTCACCAAATAATGGAACAAACTCAAAGACAGAATCAGGCAGTGAGTTCGCCTTCATCGTCGAAGTCATCACCAAAAAAATCTAAGTCAAGTAGCAGCAAAAGCAAAGATAAAACGGTGGCAGCGGCGTCATCTACTTCATGGTCACCAAGTTCGCAACAGCAACAATGCAGTATCCCAGTCAAAACGATATCCACTGGTGCTCCGAGTCCTCAAGGCAAAGTCACCACGACGACGCCTTCAGCACCGTCCCCCACAGCTTCGGATAAACAACCCATCCTGAAACCGGTGGAATGCAATTTGTGcaagagaagatttaaaaatattcccgCTTTAAATGGCCATATGAGATTACACGGAGGATACTTTAAAAAGGATCCAGACAGTAAAAAAGCAGACAAAAAGGAACAAACTGGACCACCTCTCCAAACGGCCAGCAGTAGTGTCCGAGCACtaattgaagagaaaataatcagCAAACGTAACTCCTCTCCCAGTACTAATTCTCATTCGGAACCAGTTACTCACATTTCCTCAGCCACTCAAGTAGATATGGATCCTAAAGTGTCATCTTTCGTAGTTCCAGCACCCCCGCAACAAGCAATCGACAAAAATCGAAGACATTCCGATGCGGAGGCTTTTAAGTCCTCCAAATCTTACCAAGAAGCTCAAGCAATAGCAGATCTTATTGTCAAAAGAGAAAAGATCTCTGTGAAACGCACTACCTCTGATCCCGGTCAATCTTCTTCTCATTTGCTTCAATATAGATCTGATTCATTTTCTCTGGATAGCGTTGACATGTATCAAAACGAAGAACCACAGTTTGTTACTCCAAGTTTGGAAGATGAAGTTTTTACTAATAATGGAATGATGCTTCAGGGTGTCGATCCTAGTCAACTGTCCCAAATACCATTCCAATCAGAATCCTTGGACGATAATTTAATGCAAATAAAAGATGAAAATTTGTTGCATATTAAAGACGAAGGGATCCTCGATATTAAAAATGAAGGTGATGAACAACTTCAAGAACTTAGTTTGGACGATATAGCGAGTTTACATGAAGAACCAATGACAATCCCACAACAATCTATAAGGATGAATCCGGTTAATCAAGATTTGCAAGCTGTATTGAACTCTCCCCTTCCAGAGAGTCTAGCGGAATTTAGCACCTATCATTCTTCCAAAAATCTGGAAATACAATCACCAAGTTATCACACGCACTCTCCTGGACAATACGCTCGATCCCCTCACAACTTTACAGCACAATCTCCGCTGCAGAGTCCTATGCTTAGACACGATTCTCCTGGTTTTGCTTACCCCACACCACCTGCTAGTCATGAAGGTCAAAGTCCCTGTTTTGGACAGAATATGAGTGTACCTTTGGTGTCGCCGAATGAAGAATTTGGACAGGTTGTAGAACGAGGATTGGATGAACCACCACAAGCGTCATCCCCACTCTCGGCAGCCTTCTACACTAGCACAATGTCCAGTTCGGCAGCAGTCGAAGAAGCAATCCAAGAAATTCTTCCTGGAGAAAGTATAAACGAAGATAACCTTTACCCCCTTTCCAATACTCCTCCTTCTCAAACGGAAAACGATTCTTTAGGTCTAACCCCTGTTCCTTCTCCACGGGTAGTATCTACCTCAATGCCTTCTCCCCACCCTTCCAATAATTTCACTTCGTCACCTAAAACTCAGAATCAAACATCTGGATTATCAAATCAATGGGGTTCAACGTCTACTACTTCCACGACTTTAATGCTTCCAAATTCCGATGATCCCTTACTGTCGAGCCAGCCAAAAGATTCTGTTCCCAAGAAACGAATACAACTTAATGGAGTTCCAGTCAGATTAATTAGCAACAACGGACTCATCGAATTAAATAGTGCGAACTTCACAGGGCTCCTGCTGGATACAAATGGAGAAATTAAACTTATCCAAACTACCGGAGGAAACTTTCCAACGAAAAATTTTGTTATGACCAATGCTCAACTGGTTACTACTAGTGGTCAAGATGCCGGCGCTAAAGATAGAGTTAAAGTGCAGAAAGTTACTGTTACTAAAGCTATACAACATCCATCGTCAACGAAGTTAATTGCTGGTAGAAGTAAAGTTGTTAATGATGTTAAAAAGGAAGATTGCAACGATGTATTTCTCAGTCCAACAACgataccAAATAATAGTCCAGTAAGGCAGTCAAGGAAAAGACTAAGAACAGAACCGCTGCAGTTGCCTGTGTTTCACCAATCAAAATTAAGAACTACGCGAAGTAAACCCCAAGGGTCTGCACAGTATACTCCGCAACCTATATTAAATCCTCAAAGACCAGGAACCGGACTTTAtgccaatttaaaacaaaaatcagGTGAAGACGGGCTTAGTTGGAACAACGATCCTATACCAGAAACAGATTCCACGCCTCATATTAATATAGGACCTCTGAATCAGTGTAGCATTCCAACATATAGGTCGGTACCAAAGCAAACAAGTCCGGAACCAATGTATGAGGATTTATTGTGGGATCCTGGTATAAGTAACTGCAGTGATTCTGAAATCGATATGTATCTGCAATTTGCCTGCTGTGCGGCTATCCCCGGAGGAGGACGAAATAAGGAATATGCCATGCATCTGCTTCACATGTGCGGAGGGAACATTCATGAGGCCATGTTGCGAATAATGCATCCGACTCCACATCTTCCGGCTGATCATCCACTTCTGGCCTATTCGTACAGTGAAAGCGACAAGTGGACGTCTGCAGAAACTGATCTCTTTCACAGGTGTCTGCTCAAGTTTGATAAAGACTTCAACCGAATTGCGGAGGAGATAAAATCAAAATCGGTAAAACAATGCGTACAATTTTACTACGTATGGAAAAAAGTTTGTGGAGATGAGTACAGCAGACTAAAAGCGTTAAGACAAATGAAGAAGAACCACAGAAGTGTTTCAGATACGGACGATAAGCCATATCCGGATGTTAGATTACTGGGGATTGCTGATAGTGAATCGCCTATGAGGAATTTTCTTTGCGAATACCCAGACTGTTCAGCTAGCTTCAATTCCCGAGCAGCCCTCAACGGTCACATCCGCATTCACGGCGGTACAGCGCGTAACTCGCCGACACCTTCTGCCGCAGAGCGGCGAAATTCTTCGTCATTTTCGGTGAGCTCGACGATCTGTCATCCTGACTCGACCGATCAAGAGTATCCCTGTAAGATTTGCGGGAAGTAA
Protein Sequence
MSPEPKGKRPKTKPTSPNRQGPQQCQVCSKVFGNASALAKHKLTHSDERKYICNVCNKAFKRQDHLNGHMLTHRNKKPYECKADGCGKSYCDARSLRRHTENHHVSPTTSNSSTTMSPAQGAAAGDAASPHGSSCIQYAPPPSGSPTMKDSGCKEGKSQLQQLLSTEPAKNTGGNNDGLTKQQLDLIHQIMEQTQRQNQAVSSPSSSKSSPKKSKSSSSKSKDKTVAAASSTSWSPSSQQQQCSIPVKTISTGAPSPQGKVTTTTPSAPSPTASDKQPILKPVECNLCKRRFKNIPALNGHMRLHGGYFKKDPDSKKADKKEQTGPPLQTASSSVRALIEEKIISKRNSSPSTNSHSEPVTHISSATQVDMDPKVSSFVVPAPPQQAIDKNRRHSDAEAFKSSKSYQEAQAIADLIVKREKISVKRTTSDPGQSSSHLLQYRSDSFSLDSVDMYQNEEPQFVTPSLEDEVFTNNGMMLQGVDPSQLSQIPFQSESLDDNLMQIKDENLLHIKDEGILDIKNEGDEQLQELSLDDIASLHEEPMTIPQQSIRMNPVNQDLQAVLNSPLPESLAEFSTYHSSKNLEIQSPSYHTHSPGQYARSPHNFTAQSPLQSPMLRHDSPGFAYPTPPASHEGQSPCFGQNMSVPLVSPNEEFGQVVERGLDEPPQASSPLSAAFYTSTMSSSAAVEEAIQEILPGESINEDNLYPLSNTPPSQTENDSLGLTPVPSPRVVSTSMPSPHPSNNFTSSPKTQNQTSGLSNQWGSTSTTSTTLMLPNSDDPLLSSQPKDSVPKKRIQLNGVPVRLISNNGLIELNSANFTGLLLDTNGEIKLIQTTGGNFPTKNFVMTNAQLVTTSGQDAGAKDRVKVQKVTVTKAIQHPSSTKLIAGRSKVVNDVKKEDCNDVFLSPTTIPNNSPVRQSRKRLRTEPLQLPVFHQSKLRTTRSKPQGSAQYTPQPILNPQRPGTGLYANLKQKSGEDGLSWNNDPIPETDSTPHINIGPLNQCSIPTYRSVPKQTSPEPMYEDLLWDPGISNCSDSEIDMYLQFACCAAIPGGGRNKEYAMHLLHMCGGNIHEAMLRIMHPTPHLPADHPLLAYSYSESDKWTSAETDLFHRCLLKFDKDFNRIAEEIKSKSVKQCVQFYYVWKKVCGDEYSRLKALRQMKKNHRSVSDTDDKPYPDVRLLGIADSESPMRNFLCEYPDCSASFNSRAALNGHIRIHGGTARNSPTPSAAERRNSSSFSVSSTICHPDSTDQEYPCKICGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01239540;
90% Identity
iTF_01238965;
80% Identity
iTF_00444545;