Dabb050820.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000282.1:1465162-1466455[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-07 0.00024 22.4 0.0 2 37 18 53 17 60 0.90 2 2 4.7 1.2e+03 1.0 0.2 12 24 138 150 135 151 0.76
Sequence Information
- Coding Sequence
- atgcCGAGAAAATACGTAAGGAAGCAGATTGTAATCAGGGGGCAGTGgagtgaagagaacttaattctagttattgaaaaagtaaaaaaaggggAAATATCGGAAAATGAAGCTCAAAAACTTTATGAAATACCGATTCGTACCTTGAGTAGGCGTCTCATTACTGGTGATACTAAAAAGTCTGGACTAGGTCCTTCAGCATCACTTGGGACAGAGAACGAAAAACGATTGACTTCTTATATTAAGCGCCTAGCTAACGCTGGTTTTGCACCTGATAGGTCTACTATTCGGTCTGTTGCCTATCAATTTGTCGAAAAGCTTGGAACTAAGcataaattttctaaagaaaaagagaaagCAGGTCAACATTGGCTTTCTTCTTTTCTAGGAAGAACCAAAGATGTCTCAGTATGTCAAGCAGAAGGTTTATCTGTTGCTAGAGCCCAAAGAATGAACCGAGAAGAAGTAGGtgcattttttaaactgcttgaagaagaaatggtaaagcacgatttaactaatagacctgaaaatatttttaatgttgacgagagtggaattcaactaataaataaacCTGGAAAATTATTAACAGCCAAAGAAACAGAGGACGTTCATGTGATCACACCTCTTGAAAAAGGAGAAAAAATTTCTCTGGTTGCATGTTGCAGTGCTGAAGGCCGTTTTATACCTTCAGTGTTAATAATGAAAGGAGTCAATAAAATGTCTGAGTTTTCTGATAGCTCGCCAAAGGGTTCTGATgtctatataaataaaaagacatcttatattaattctgaattatttttgcgtTGGTTTAAGGAACATTTTCTACCCAAAAAACCAAAGATAGGTAAAacgattttgatttttgattgtCACACCTCACATTCCAATTCAATAAATCTATTAGACCTAGCAAATGGAAATGATATCATAATTATATGCTTGCCGAATCACACTACACAAGCCCTTCAACTTCTTGATTGCAGTTTTTTCCAACCTCTGAAAACCTATTATAATCAAGTATCAAATGCATGGATGTTGAGAAATAAGAATAGAACTATAACACGACTACAGTTTGGGTCATTAATAGGGCAAGTATGGGGAAAAGCTGCAACCGGGGGAAATATCACATCAGATTTTAAAGCTTGTGGAATATTCCTACTCAATCCTAATGCTATTCCAGATCATTTCTTTGCCATATTAAAGTAG
- Protein Sequence
- MPRKYVRKQIVIRGQWSEENLILVIEKVKKGEISENEAQKLYEIPIRTLSRRLITGDTKKSGLGPSASLGTENEKRLTSYIKRLANAGFAPDRSTIRSVAYQFVEKLGTKHKFSKEKEKAGQHWLSSFLGRTKDVSVCQAEGLSVARAQRMNREEVGAFFKLLEEEMVKHDLTNRPENIFNVDESGIQLINKPGKLLTAKETEDVHVITPLEKGEKISLVACCSAEGRFIPSVLIMKGVNKMSEFSDSSPKGSDVYINKKTSYINSELFLRWFKEHFLPKKPKIGKTILIFDCHTSHSNSINLLDLANGNDIIIICLPNHTTQALQLLDCSFFQPLKTYYNQVSNAWMLRNKNRTITRLQFGSLIGQVWGKAATGGNITSDFKACGIFLLNPNAIPDHFFAILK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -