Dabb038472.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000149.1:8500815-8505720[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-09 1.4e-06 29.5 0.0 1 37 17 53 17 60 0.94 2 2 5.5 1.4e+03 0.8 0.1 12 23 137 149 131 151 0.68
Sequence Information
- Coding Sequence
- atgccGAGAAAATACGTGAAGAAACTTACGGTAGTCAGGGGACGGTGgagtgaagagaacttaattctggctattgaaaaagtaaagaaaggagaaatatcgaaaaatgaagCTCATAAACTTTATGGAATACCGATTCGTACCTTGAGTAAGCGTCTTATGATTGGTGATACTAAAAAGTCTGGACTAGGTCCTTCAGCATCACTTGGGACAGAGAACGAAAAACGATTGGCTTGTTATATTAAGCGCCTAGCTAACGCTGGTTTTGCACTTGGTAGGTCTACTATTCGGTCTCTTGCCTATCAATTCGCCGAAAAGCTTGGAATTAAGcataaattttctaaagaaaaagacAAGGCAGGTCAACATTGGCTCTCTTCTTTTCTAGAAAGAAACAAAGATGTCTCAGTACGTCAAGCAGAAGGTTTATCTGTTGCAAGAGCCCAGGGAATGAACCGAGAAGAAACCAGCACACAACAAATGTGCCCATCTCTTACAGATGGTACAGGAACACCAGCCTTCATTGGACTTGGAGTAAAAATCATGGTAGTACAAGCAGGCCGCCTCGTCATCTTCGAAGCTCATGACAGATTCAGTGACGGTTCTTTTTGA
- Protein Sequence
- MPRKYVKKLTVVRGRWSEENLILAIEKVKKGEISKNEAHKLYGIPIRTLSKRLMIGDTKKSGLGPSASLGTENEKRLACYIKRLANAGFALGRSTIRSLAYQFAEKLGIKHKFSKEKDKAGQHWLSSFLERNKDVSVRQAEGLSVARAQGMNREETSTQQMCPSLTDGTGTPAFIGLGVKIMVVQAGRLVIFEAHDRFSDGSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -