Dabb026990.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000103.1:26127729-26134138[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-11 1.8e-08 35.6 0.0 1 44 20 63 20 64 0.96 2 2 7.7 1.9e+03 0.3 0.0 14 26 135 147 132 147 0.83
Sequence Information
- Coding Sequence
- ATGGATTTGAAAAAGaatgcCGAGAAGAGGGAGCATACGGTATTCAGGGGGCAGTGgagtgaagagaacttaattctggctattggaaaagtaaaaaaaggagaaatatcgaaaaatgaagCTCAAAGACTTTATGGAATACCGATTCGTACCTTGAGTAGGCGTCTCATGACTGGTTATACTAAAAAGTCCGGACTAGGTCCTTCAGCATCACTTGGGACAGAGAACGAAAAACGATTGGCTTCTTATATTAAGCGCCTAGCTAACGCTGGTTTTGCACCTGATAAGTCTACTATTCGGTCTCTTGCCTATCAATTTGCCGAAAAGCTTGGAATTAAGcataaattttctaaagaaaaagagaaGGCAAGTCAATATTGGCTCTCTTCTTTTCTAGAAAGAAACAAAGATGTCTCAGTACGTCAAGCAGAAAGTTTATATGTTGCAAGAGCCCAGGGAATGAACCGAGAAGAAGACAATATTATGCCGGCTAAGAATTCGGGGTTCAGTGATGGTGCTACCACACTGTCTGATATATTGGATAGAATGGTGACTACTTGTTTAGCTAGATTATATCAAAGCATTTGA
- Protein Sequence
- MDLKKNAEKREHTVFRGQWSEENLILAIGKVKKGEISKNEAQRLYGIPIRTLSRRLMTGYTKKSGLGPSASLGTENEKRLASYIKRLANAGFAPDKSTIRSLAYQFAEKLGIKHKFSKEKEKASQYWLSSFLERNKDVSVRQAESLYVARAQGMNREEDNIMPAKNSGFSDGATTLSDILDRMVTTCLARLYQSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -