Basic Information

Insect: Diaphorina citri
Gene Symbol: -
Assembly: GCA_000475195.1
Location: CP125330.1:2140298-2144871[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.05 4.4 9.3 1.5 1 23 331 354 331 354 0.98

2 8 0.0039 0.34 12.9 0.2 3 23 364 385 363 385 0.96

3 8 0.00017 0.015 17.1 0.6 1 23 421 444 421 444 0.95

4 8 1.3e-06 0.00012 23.8 1.0 2 23 454 475 454 475 0.98

5 8 7.6 6.7e+02 2.5 0.1 5 21 484 500 482 501 0.90

6 8 0.00054 0.048 15.5 2.8 1 23 815 838 815 838 0.93

7 8 0.0012 0.11 14.4 1.2 1 23 901 924 901 924 0.98

8 8 1.8e-06 0.00016 23.4 1.8 1 23 933 955 933 955 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.05	4.4	9.3	1.5	1	23	331	354	331	354	0.98
2	8	0.0039	0.34	12.9	0.2	3	23	364	385	363	385	0.96
3	8	0.00017	0.015	17.1	0.6	1	23	421	444	421	444	0.95
4	8	1.3e-06	0.00012	23.8	1.0	2	23	454	475	454	475	0.98
5	8	7.6	6.7e+02	2.5	0.1	5	21	484	500	482	501	0.90
6	8	0.00054	0.048	15.5	2.8	1	23	815	838	815	838	0.93
7	8	0.0012	0.11	14.4	1.2	1	23	901	924	901	924	0.98
8	8	1.8e-06	0.00016	23.4	1.8	1	23	933	955	933	955	0.98

Sequence Information

Coding Sequence: ATGTCAGTCAAGCTTGAGCTGATTCCTAGTGTATACTTCCTTGTCAAaaatGGTGTGactatcaaagaagaaaaaattgatctGGACGAAGATCAGCGAGAGGAGCTGACTTATTACGAAGACGATTTTCCCGCCGAGGCCGAAAACGAAGACGATTTTCCCGCCGAGGCCGAAAACGAAGACGATTTTCCCTCCGAGGCCGAAAACGAAGACGATTTTCCCTCCGAGGCCGAAAACGAAGACGATTTTCCCGCCGAGGCCGAAAACGAAGACGATTTTCCCTCCGAGGCCGAAAATGAAGACGATTTTCCCGCCGAGGCCGAAAACGAAGACGATTTTCCCTCCGAGGCCGAAAACGAAGACAATTTTCAAGGCCCCGCCGAAGCCAAAAACATACGAAACAAGTCCAAGACGCCGGAAAAGAGTCGGCCGGGGAGTTTTAACTATAAATACGTCTGGAATAAATCGCTGAGTAAGATGACAATCCCTGTCGAGGTGAAATACGTTTGGAATAAATCGCTGAATAAGATGACAATCCCTGTCGAGGTGAGGAAAGGCGTACGAAGCTCACCTAGGATATCTGAGAAACCTTtggaagatgatgatgatgaggaagaaGCCGAGTTCAATCTGTTAAAACTGGATGCGCGCGCCGAATTCTCCTCGGACGATGAAGACGATGAGGGTGATGATTCAGACGATATGAAACCCTGCATGAAACCGCGCTATCTGTTCATCCGACGACCCAACGGTGGTGTGTTCGCGAACCCTATTCCCTTGAGTCGGAAGCCTTCGGGTGATGTCGAGGATGAACGAACTGACCTCGTGTGGAGTCGAGAGAAAACGAGACTCGTCAAGCGAACCTTGCTCACCATGGGCGTGTCCCCGAGGTGGAACGATGCGGAACTTATACAGGATGATGAGAAGAAACTCGAACAGAAGGAGATGGCTAAGAAGCCCACTGTGACAGAGCCTGCTGGTGAGGAGGCCTTCACGTGTCGCATCTGTCAGGCTGTGTTCGATAAGTATGTCCGTCTGTGCGGTCATTTGAGAACAGTCCACAATGAGAAACCCGAGAAGAGTAACCTCTGCTTCGTGTGTGCCAAGGTGTTCGCGACCCGGGCCACACTGACACTACACATTAAGCAGATGCACGGGGGCGGACAGACGGACTATGTCCGCGAGAAGGAAGTGTGCGAGATCTGCTCGGCGCGTGTCGTGAACCTCGCGGAGCACAAGCTCTGTCACGAGCCGCCTCGCTTCACGTGCGAGTACTGCGTGAAACCGTTCCGACGTACGCAGGAGTTGCGCAACCACGTGAAGGCGGTGCATCTAACGGAAACCCCAGAAGAACGCCCGCGCTGTGAGGTTTGCGGCAAAACGTTCGGACTGAAAGAGTACTTGCGTCGGCACATGCGCACGCATCGAGTGGAGAGAAAGTACAAGTGCGTGTGTGGCGATGGATTTAACTTTAATGTTTCGCTCAAGGTGCACATGGCGAAATGTGCTTTCTATCTGAAGTCGTTGGAAAAGGAAGGGGAGGAATCATCCGATGATATTTCGAGGGAGTCTTCCATCTCGAGATCAGCGTCTGGCCCGCGACAAGATAACCACCGACCTGTCGCCACACTGGGCGACCGCGAcaatgatgatgacgatgataaTTCCGATGTGGATGAGTACACGGCATTCAATCCGAACATCGTGGTGAAGAAAGAGGACGGTGTCTCCCCGGTGGACGTCGGTGGCGCAACGTTTGGCAACACGGGGAGCATTGTTGTCAAGTCGGAACCGCTGGGTGATACCCCCGCGTCGGATGGGAGACAGTCCCGTAGCCGCACCACCAGGCGCCCTGCCGCCTCGGATAGCGATGCTGACAGTGGAACATTCGGGAGTCACTTCCTATCCAACCCACAGAACAAACCCGCCAGCGCGCGGACACAGAACTTGAAAACCGTCCTCGAGTCGAACCTGGGCACCCTGGTCAACAAGTCCTCCGCCAAGTCACAGAACTATCTGGCCGTCATCATGAAGAACTATGAGAACCGCGCCATGGAACCTGTCCCGGCCGAGATGGGAGAATCTGTCTCGGATCTCGAGGATAAACCCTTAGCCAAGCGGAAAGCCCGGAGCAGGAAGAGTGTTGGTCCTCCGAGTGTGAAGAAGGAGAATCGTGAGAAGTCTTGCGAGAGAAAACCGTCACGACGGAAATCTACTGTAGAGGATTCGGATACAGATTATGTTCCTGAGGTCGAGGAGGAACCACCTgtcgagaggaagaagaaggagaagcgggagaagaagaagaaaaagaagaaggagaagatcaaGCGAGAGAAAGCGACCACAGGGGATGAAATGTCAGACTTTGCATTCTCAAGCTACGAGTCTGACTCGAGTGAGAGTTCCATGTCTGAGAGAGAACTGTTCGGGCCCATCATCTACAAGTGTAGACATTGTGACGTCACGTTCAGAACCTACGAGCTACTCCTACGCCATCTGACGGGGAAACATGGCGGCTTCGAGAGTGCTGCCCTCTGCTTCATCTGCGGATTCTATCACAAGCACAAGAAGATGATCTACCGTCACATCAAGGAACACATAGAACCCAAGAAGCAAGAGAAGAAGGTGTGTGACATCTGTTCAGCAGAGGTGATACATCTCGGTACGCACCAGAAGGTGGCACACTCTGGTGTGACGTACAACTGTAAGTTCTGCTCCATGAAGTTCACCAGGGTCGGTCAGATGAACATTCACATCAAGACGGTTCATTTGAAACACATGCTGGAGAAGAAGTTCGTATGCCAGTACTGTAACAAAGAGTTCCCGTTCCAGGGCTATCTGAACAAACATATGAAGACGCACAATCACCATGGCAACGGACCAGGGGGCGGCGGTCACGTGACCTACACGTCTGGTGTGTGGGACTGGGGGACAACAACAGAACCAGGGGGCAACACGAGCGCTCCGAATCCCCTGGTGCCACATCCGAGTACTAGCTCCATGTCGGAACAAGATGTACTTCAGCAGCAGCTGCAGCATTCAGCACAGGTACAAGCGCAGGCAGCACAGCAAGCAGCACAGGCAGCAGCGGAACTTAGCATACATCAAATACAGAGTGCTAACTTTCCACTCAAACTGGAACGAGCCAGCATGTATTACTTCTAG
Protein Sequence: MSVKLELIPSVYFLVKNGVTIKEEKIDLDEDQREELTYYEDDFPAEAENEDDFPAEAENEDDFPSEAENEDDFPSEAENEDDFPAEAENEDDFPSEAENEDDFPAEAENEDDFPSEAENEDNFQGPAEAKNIRNKSKTPEKSRPGSFNYKYVWNKSLSKMTIPVEVKYVWNKSLNKMTIPVEVRKGVRSSPRISEKPLEDDDDEEEAEFNLLKLDARAEFSSDDEDDEGDDSDDMKPCMKPRYLFIRRPNGGVFANPIPLSRKPSGDVEDERTDLVWSREKTRLVKRTLLTMGVSPRWNDAELIQDDEKKLEQKEMAKKPTVTEPAGEEAFTCRICQAVFDKYVRLCGHLRTVHNEKPEKSNLCFVCAKVFATRATLTLHIKQMHGGGQTDYVREKEVCEICSARVVNLAEHKLCHEPPRFTCEYCVKPFRRTQELRNHVKAVHLTETPEERPRCEVCGKTFGLKEYLRRHMRTHRVERKYKCVCGDGFNFNVSLKVHMAKCAFYLKSLEKEGEESSDDISRESSISRSASGPRQDNHRPVATLGDRDNDDDDDNSDVDEYTAFNPNIVVKKEDGVSPVDVGGATFGNTGSIVVKSEPLGDTPASDGRQSRSRTTRRPAASDSDADSGTFGSHFLSNPQNKPASARTQNLKTVLESNLGTLVNKSSAKSQNYLAVIMKNYENRAMEPVPAEMGESVSDLEDKPLAKRKARSRKSVGPPSVKKENREKSCERKPSRRKSTVEDSDTDYVPEVEEEPPVERKKKEKREKKKKKKKEKIKREKATTGDEMSDFAFSSYESDSSESSMSERELFGPIIYKCRHCDVTFRTYELLLRHLTGKHGGFESAALCFICGFYHKHKKMIYRHIKEHIEPKKQEKKVCDICSAEVIHLGTHQKVAHSGVTYNCKFCSMKFTRVGQMNIHIKTVHLKHMLEKKFVCQYCNKEFPFQGYLNKHMKTHNHHGNGPGGGGHVTYTSGVWDWGTTTEPGGNTSAPNPLVPHPSTSSMSEQDVLQQQLQHSAQVQAQAAQQAAQAAAELSIHQIQSANFPLKLERASMYYF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00443312; iTF_00443316;
90% Identity: iTF_00443316;
80% Identity: iTF_00443316;