Dcit026523.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125329.1:32289932-32294298[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.45 40 6.3 1.4 1 19 227 245 227 250 0.85 2 11 0.95 84 5.3 0.3 2 23 260 282 260 282 0.95 3 11 0.013 1.1 11.2 2.7 1 23 287 309 287 309 0.97 4 11 8.2e-05 0.0072 18.1 2.2 2 23 314 336 313 336 0.97 5 11 0.0051 0.45 12.5 4.7 1 23 342 365 342 365 0.94 6 11 0.41 36 6.5 1.5 1 20 371 390 371 394 0.95 7 11 0.01 0.89 11.5 1.1 1 23 400 423 400 423 0.96 8 11 3.9e-05 0.0035 19.1 1.2 1 23 430 452 430 452 0.98 9 11 3.9e-05 0.0034 19.1 0.7 2 23 460 482 459 482 0.96 10 11 1.1 97 5.1 0.6 2 13 488 499 487 501 0.86 11 11 0.00013 0.012 17.4 1.2 1 23 577 600 577 600 0.96
Sequence Information
- Coding Sequence
- ATGAACGCACATCCGCAATTCCGCACATTATCAAAGCGCGAAattcaaaaatATAATTGCTTAAAGTGTGTATTGCTTACAGGATTGGTCAAGATGATTGAACCATCAACTGCACACAAGACAACGTGTAGATTGTGTTTGGACTCGGATGAAAATTTGTTAAGTGTGTTTGAAGTTCCAGAACTGGACAAATACATCTATCAGTGTGTGTTCATtaagaTTGTGCCCTCTGACAGTTTTCCAACCAATGTTTGTTTCAAATGTATCACTGAAGTTCAGAACTGGACCCGATTTAAGAAGACTTGTGACCAAAGTCAAACAATATTATGCAAGCAGTTCAAGAAGTCTCCACTGCCCTCACTGAGCATTAACAATATTATAAATGACAACACCATTGACATGGATCTTAGTTTGTTCGAGCGTGAGTCGTTGTTCAATGAGATGGAGGCAGATGTGTCCATAATGCCCACAATACCAAATCACTCAACACCACTTCATGAACTTCCACTCCAAGAAATGCCAGcAATCCAGGTTAAGGAATCAGAAAACTTGAACCAATCTAAAGTAGATCCTCCTCCAGTTACAAAGAGACCTCTGTATGTGAAGAGTATTGAGAGATGTTACCAAGCTATCAAACAACATGATGGAAAGGACAGATTTCCTGCAAGATTTCGTTCGTACACTTGTGACGTGTGCTCGAAATCGTTTCTCAAATTTAGCAAGCTAATCTATCATGATCAGTTGAAACACAAACATCTACTCGAGACACAAGGCGCCCAATGTGACCAATGTTCGGAAGTGTTCCTCAATGCCAATCGCCTGGACACGCACATCTTGATGAAACATGCGACTCGTCAACACCAATGTCCACATTGTATGAACAGCTATGTATCCTGGAACTCCCTGCGAGTGCACATGTATCAACACACAGAGAAAAACAAGTGTTCCGAGTGTAACAAATTGTTCAGTTCCAAATTCAGTCTGATGGATCATATGAATCGGACTCACCGCAAAGTCAAACTGCACGCCTGTATGTACTGTGATAAAACCTTCTGTTCCTTGGGTGAAGTTAACAGGCATGAGCGGCATGTCCACTTCAACATGACACGCTACAAGTGTCACGCATGTGACGTGGAAACCAAAACGCGTCAGGCGTTGGACAATCACATCCTGTGTGTGCACACCGAGACCAAATCATTCGCATGCGACCAGTGCGTGTCCTATTTCAAAACCAATAGCGCGCTTCTTCAACACAAAAGGAAGATGCATGACGAGTTTGTGAATCTATTCTCCTGTCCGCTATGCGGTGAGGTGTTTCGCAGTCACCAAGGATATAAGATTCACGTGAGAAAGCATAGACGGGAAGGCCGGACGAAGTATTGTTTCTATTGTGAGCGTGCGTTTGTGTCCAAGTTCAACCTAGCGCAACATATACGACGTATCCATACGGTGCCTAATCAGAAGTGTCAAGTGTGCGGGAGAGCGTACAGGAAACGACACAAGTGTCGCATTGTAGAGGAAGTTACTGTGGAAGTTGACCCGTGTATGAATAAGTCTGAACAGTGCGTACAACAGTGTATGAATAAGTCTGAACAGTACGTACAACCGTGTATGGATGAGTCTGAACAGTACGTACAACAGTGTATGAATAAGTCTGAACAGTACGTACAACCGTGTATGGATGAGTCTGAACAGTACGCACAACCGTGTATGAATAAGAGCAAGAGGTATGCTTGTAGTTTGTGTGCGCGCAGCTACAGTAAGAAATATAATCTGCAGCGTCATGTACTCAGTTTTCATGTTAAACCGAGTGATGAGGTCCCGTGTGATGGTGTTCTGGTGAGTTCTAGTGATGTAGAAATTCAATGTGATAAGGGATTAAAAGATAACGAAAGTTTATGTAAGATATCCGACAGCTGTGGTGGTAAGGAAGAGGCAATTATTGCGTCTGACGTGCAGGAGGATGCTGGGAATGATAAGGAGAATCTGAAAAACAAGATAACATATTGA
- Protein Sequence
- MNAHPQFRTLSKREIQKYNCLKCVLLTGLVKMIEPSTAHKTTCRLCLDSDENLLSVFEVPELDKYIYQCVFIKIVPSDSFPTNVCFKCITEVQNWTRFKKTCDQSQTILCKQFKKSPLPSLSINNIINDNTIDMDLSLFERESLFNEMEADVSIMPTIPNHSTPLHELPLQEMPAIQVKESENLNQSKVDPPPVTKRPLYVKSIERCYQAIKQHDGKDRFPARFRSYTCDVCSKSFLKFSKLIYHDQLKHKHLLETQGAQCDQCSEVFLNANRLDTHILMKHATRQHQCPHCMNSYVSWNSLRVHMYQHTEKNKCSECNKLFSSKFSLMDHMNRTHRKVKLHACMYCDKTFCSLGEVNRHERHVHFNMTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHVRKHRREGRTKYCFYCERAFVSKFNLAQHIRRIHTVPNQKCQVCGRAYRKRHKCRIVEEVTVEVDPCMNKSEQCVQQCMNKSEQYVQPCMDESEQYVQQCMNKSEQYVQPCMDESEQYAQPCMNKSKRYACSLCARSYSKKYNLQRHVLSFHVKPSDEVPCDGVLVSSSDVEIQCDKGLKDNESLCKISDSCGGKEEAIIASDVQEDAGNDKENLKNKITY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443303;
- 90% Identity
- iTF_00443303;
- 80% Identity
- iTF_00443303;