Dcit018007.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- RREB1
- Assembly
- GCA_000475195.1
- Location
- CP125326.1:19175894-19183955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.3 5.5e+02 2.8 0.3 1 23 55 77 55 77 0.94 2 13 0.0023 0.2 13.6 0.6 1 23 92 114 92 114 0.98 3 13 0.00019 0.016 17.0 3.7 1 23 120 143 120 143 0.96 4 13 0.021 1.8 10.6 0.3 2 21 311 330 310 331 0.94 5 13 0.44 38 6.4 0.2 1 23 458 480 458 480 0.97 6 13 5.1e-06 0.00045 21.9 2.2 1 23 492 514 492 514 0.99 7 13 0.002 0.18 13.7 3.1 1 23 520 543 520 543 0.97 8 13 0.017 1.5 10.8 3.4 1 23 917 940 917 940 0.95 9 13 0.00011 0.01 17.7 0.5 3 23 1223 1243 1222 1243 0.98 10 13 0.17 15 7.7 6.1 1 23 1249 1272 1249 1272 0.97 11 13 0.85 74 5.5 0.5 1 19 1303 1322 1303 1323 0.95 12 13 0.0065 0.57 12.1 0.5 3 23 1443 1463 1441 1463 0.96 13 13 0.018 1.6 10.7 6.0 1 23 1469 1491 1469 1491 0.98
Sequence Information
- Coding Sequence
- ATGACGACCTTATCAGTTCAATCGGAAAACAGGGCACTCAACTTCATCATCAAGTCTGAGGATCTAAGCGATGCGTCTCCACTAGACCATGACAGGCTGTCCGAAAAGCACAAGAGTCAACTTTTGATAAGTTCGGCCCGCATCACAACGGACAAAGAAGAATTCGAGTGTTGGATTTGCAAAGCAATTTTCTTATCCGCCAATGAATTCACATTTCACTTGAGATCTCACAACAACGGAGCTGACAGCATTTCCCCCGATAACAAATCAAGATTCTCGTGTAAAATCTGCCATAAGATGTTGGGCTCAGCAAACTCATTGGATCGCCATATTCTGATTCACACTGGTGAACGTCCTTTCAAGTGCAAATATTGTAGTCTGACATTCACAACAAATGGAAACATGCACAGGCATGTGAGAGCCAATCATCAAGCCAAGAATCTAAACTCATCCACTGATGACTACTGGAGTCATGATAGTAATGGTAGTGTTGATAGCTATGATGAACATAGCAGCTCTCCTAGTacaaatgagaagaagaggaagttcTCTGACTCGGaatataataacaacaatacctCCAACACTATTGACAACAATAACCTACATGACAAATGCAAGGATGTCATTTCACGAGGTCTGGACCATTTCGTCTGTCCTGTATGCAACACTGAGGAGCCTTCTATTCAAGACTTGGAGATTCATCTGACCGAAACACATCCTGACTATCAAGCTCGCTGTGACAAGTGCAACCTGCTATTCCAGAACCATCAGTTTCTCAACCTCCACGTCTATATGGTGCATCATAGGGATAACGTCTACAATGGTTTCAATGGCCGGAAAATAACAATCCCTGATTTGGCTGGATTGATAAAAGAATCCCAAATATTGTCAGGAAAAAGCACAACAAATGGATTAGCTCATGATTTAAAATGTGAAAAGTGCTTCTTAGAATTTTCCAATAGCAATGATCTAGCCATTCATTACAAAAGTTGCGTCGCATCTGATGGGGAAACCTCCTCGAATGAAAATTATTCTGCAACTGATCTCAGTAGTGTAAAGTCCAAGAGAAATTGTTCTGAAAGTTCTGTCGAAGATGAGAAAAAGCGGGACGAATTTTTCAGTGGTTTAGATCTCAAAAACATTAGTCAACATGCCAATAAAAGTCTGTCCAATGGAGTGGAAAACAAAGATCTTGCTGACATACAAAGTATTATAACCAACACGTCTACAACACATCTTATCGCAGATCTATCAAAGTCACCAGAGCCAAACAGTGTAGACATTTCTCCCATGGACTCATCATGTGGAGATGAAGAGCAACAAGACTGCTTTGCTGCTGAGTTTCGTAAGATGAAACTTCGTGGTGAATTCCCATGTCGATTGTGTTCATCCATTTTCCCAAACTTGAGAGCTCTCAAAGGTCACAACAGAGTTCATTTGAATAGTTGTCCTGGTAGTATTAACGATCCATACAGATGTAACATGTGTCCACACTCAAGCACTGATAAATCTGCTTTGCTCCGACACATGAGAACCCACAATGGTGATCGACCGTACGAATGCAGTATTTGTCGTTATGCTTTCACCACAAAAGCAAATTGCGAGAGACATTTACGAAATAGGCATTCGAAAATGACCAGAGAAGATGTTAAGAAGTCCATCATTTATCATCCCTCAGAAGACCCAACCAATGATTTCTCAGATCAGTCCAGTTACTATTCTAAAGAAGAATTTAAGAAGTCACTTTTCTCTGACTCCCTAAAAGATAGTATTGGTCTTTTGAAAAGTCGAGTCCGAGTAAGTTCACTCATCTCGGAAAAAACAAAAGTGCCACCTACTGAAACTGCAGAAAGTCTGAAAAGTGCAAACAGTATTATGAATTGTTCAATGAACTCATCTGATTGGTTAGATGAAAGCCCCGAAAGGAGAGGATTAGATGTGAGTGCCATGACAtcagacgaagaggaagaagaagtagtagaggAGAAAATGATTAAAACTGAACCGAAAACTATTGAGGAGACACCTCTTGATCTGAGTGTTGATGTTCTTGATCTGAGcaagaaaaatcaacaaatctTACAAACTGCTGCTAAAAGCGATGAAGAGAAACCTCAAGACTTGTCGATAAAAACAACAGAACCCTTACAAAGCATTGAATCTAGTCACAGTCCATCTTACATTGTACCAATTGAATctaaagtaaaagaagaacctAAGGAACCAAATTCAGTAGATCAGAATCCGGTAGATATGACGGGACTCtatgtcaaaaatcaaatcaatcagcTTTACGATCTGGTTGAAAATCGACCATTCCCTCCCAATTTGCCTGCTGCATTTCACCCCTACTTTTTCCCAACGCCCATGTTACCACTAGGGTTTCAACCTCCAAACATGAACGGTGCTAAAGATCAATTTCAAAAAGATATTTTCCGAGGAATGCAACTTAATTCCAGAGGAGTTATGGATCAGATAGCAATGGCATCTGCTGCAGAAAGAATTCACGCAATACAACAACAAGCTCTCGCCGAGTACAATAAAAGAATGGAAACAAAAAATCAATTCGATAAAAAGCCCTTGGAAAACCCTGCCTTACCTGTGCAAAACAACgccaacaataacaataatgaaaacttGACTGTGAAAACTCCGTCTAGTGCATCATCTTCAGTGAAAATGGTGCTGAAAGATGGCGTATTACAGGCAAAACCTAAACAAAGACGTTACCGTACTGAAAGGCCTTTCTTCTGTGAACATTGCTCAGGAAGATTCACACTGAGATCAAACATGGAGAGACACATCAAGCAGCAACATCCACAGTTCTGGATTCAGAAACAAAGAGGTGGATCATCTGGATCTAGACGTGGTCATCCTTACAAACTTTTGAGCTTTTCTGAAAGAGGAGACAACAAGATGATGCCCCTTGTACCCGGGTTTAATCCAACCGGATCTAATGGATTTGACGACATAAACCATTATGGAAAAACGCTTCCCAACTTTGGGAACAATGAAGGTTTGAAGTCAATATCCGATGAAGTACGAATTGCCATTTCCTTGCAACTGAAAAACAAAGTAATTTCTAACGAAGAGAATGGCAAgtattatgaaaatatgaaatcttCTGATTCCTTATCGGACCATTTCAGGCGATCTGAACACAAGGAGGAAATGTCTCGCATGGAACAAGACTTCGAGTCTCATGAGCGTAACGATGATACAGGGAATGAAGATTATgatgaagaggatgaggaggaagaggaagaagaagaggaactgATAATTGATGAAACATCTGTAGATAATAACGATAACCACAGTATGAACGGGGATgttgaggaggagaaagtagaaATAGAGGACCAAACCAAACAGAGtacaaaacagaaagaagatAATGGTGCCTTGGATTTGGCAAGTGTTTCTAGACTTTTGGACAATGCTTCTACTCAGACATTTCGGCAGTTTTTTCATGACGAAGAAGAACACAACCATGATGGaagtgatgaagatgaagaaggattGGTAGCAGGCAGCAACAGTGAAGGCAACGGCTCCGGCAGTGATgagaatagATCAGAGTCCGAGCACAATGCCAACTCCTCTACTGAAGCGCCACCGAAGAAGAAAAGCGCCTACTCTCTCGCCCCAAACCGCGTGTTTTGTCCTTACTGTGATAGAAAATTCCCTTGGTCCTCTTCTCTAAGGCGACACATCCTTACGCATACCGGACAGAAACCGTACAAGTGCAGTCACTGCCCGCTCCTGTTTACGACGAAATCTAACTGTGATAGACATCTACTTCGTAAGCATGGCGGACAAGTTCCCCCTCCAGTAGAAGTTGGAGATAAAGCAGCATTAGACAGTCAATCCTTTGCGATGCGGAATGTACCAGAGCGTCCATTCAAGTGTGTCTACTGCCCAAGCTCTACATTTGCCACTCTCAATAATCTGAAGAAACATGTCTGGTGCAAACATCAGAAATCAGACGATGCTAATAGTGGTTATGAGGAGAGTCAAGGCAGTGGGAGTGAAGATATCGAGGTATCAGACAAGAAGTCTCCTCCCATGGAATATCACATGTCTGGAGACTTACCCTTCAAATGTTACCTCTGCGAAGGAAGCTACGCTGAACGACAAGAAGCATTAGATCACATCAAACTCTCCCACGCTTCCGAGTTTCAACTTCTCGTGTCAAAGGGAGCGTTAGATGCGAATGTAACACAGGAGGAACCACAACACCATGATGACGCAAACACAAGCGAAGAAAATCTGGAGCAACTCAAGGGGAAATTTCCTGATTACGCTAATAGGAAGGTCATGTGTGCATTTTGTTTAAGAAGATTCTGGTCCGCAGAAGATTTGAGAAGACACATGAGGACTCACACGGGCGAGCGGCCTTTCTCCTGTGACATTTGTAGACGAAAGTTCACCCTCAAACACAGCATGCTCCGACATCGCAAGAAGCACAACAAAATGTCCAACTCTGAGGAGAACTTCAACAGTGATGACGAAGCTCCTGTGCCGCAAAATTTCCTCAACAATAACAACTCTATCATTAACATCCCTGTCAACTTCTGGGCGAAGAGGGAACATGAGGGAAGTGATTTGATAAGTAACTTACTAGGTATCCACGACAAAACGATCATTGATAAGATGCTCTTGTCTAAATCTGCAGAAGACGCAGCTAGGTTGTTGGGCGTTCAAAAATAA
- Protein Sequence
- MTTLSVQSENRALNFIIKSEDLSDASPLDHDRLSEKHKSQLLISSARITTDKEEFECWICKAIFLSANEFTFHLRSHNNGADSISPDNKSRFSCKICHKMLGSANSLDRHILIHTGERPFKCKYCSLTFTTNGNMHRHVRANHQAKNLNSSTDDYWSHDSNGSVDSYDEHSSSPSTNEKKRKFSDSEYNNNNTSNTIDNNNLHDKCKDVISRGLDHFVCPVCNTEEPSIQDLEIHLTETHPDYQARCDKCNLLFQNHQFLNLHVYMVHHRDNVYNGFNGRKITIPDLAGLIKESQILSGKSTTNGLAHDLKCEKCFLEFSNSNDLAIHYKSCVASDGETSSNENYSATDLSSVKSKRNCSESSVEDEKKRDEFFSGLDLKNISQHANKSLSNGVENKDLADIQSIITNTSTTHLIADLSKSPEPNSVDISPMDSSCGDEEQQDCFAAEFRKMKLRGEFPCRLCSSIFPNLRALKGHNRVHLNSCPGSINDPYRCNMCPHSSTDKSALLRHMRTHNGDRPYECSICRYAFTTKANCERHLRNRHSKMTREDVKKSIIYHPSEDPTNDFSDQSSYYSKEEFKKSLFSDSLKDSIGLLKSRVRVSSLISEKTKVPPTETAESLKSANSIMNCSMNSSDWLDESPERRGLDVSAMTSDEEEEEVVEEKMIKTEPKTIEETPLDLSVDVLDLSKKNQQILQTAAKSDEEKPQDLSIKTTEPLQSIESSHSPSYIVPIESKVKEEPKEPNSVDQNPVDMTGLYVKNQINQLYDLVENRPFPPNLPAAFHPYFFPTPMLPLGFQPPNMNGAKDQFQKDIFRGMQLNSRGVMDQIAMASAAERIHAIQQQALAEYNKRMETKNQFDKKPLENPALPVQNNANNNNNENLTVKTPSSASSSVKMVLKDGVLQAKPKQRRYRTERPFFCEHCSGRFTLRSNMERHIKQQHPQFWIQKQRGGSSGSRRGHPYKLLSFSERGDNKMMPLVPGFNPTGSNGFDDINHYGKTLPNFGNNEGLKSISDEVRIAISLQLKNKVISNEENGKYYENMKSSDSLSDHFRRSEHKEEMSRMEQDFESHERNDDTGNEDYDEEDEEEEEEEEELIIDETSVDNNDNHSMNGDVEEEKVEIEDQTKQSTKQKEDNGALDLASVSRLLDNASTQTFRQFFHDEEEHNHDGSDEDEEGLVAGSNSEGNGSGSDENRSESEHNANSSTEAPPKKKSAYSLAPNRVFCPYCDRKFPWSSSLRRHILTHTGQKPYKCSHCPLLFTTKSNCDRHLLRKHGGQVPPPVEVGDKAALDSQSFAMRNVPERPFKCVYCPSSTFATLNNLKKHVWCKHQKSDDANSGYEESQGSGSEDIEVSDKKSPPMEYHMSGDLPFKCYLCEGSYAERQEALDHIKLSHASEFQLLVSKGALDANVTQEEPQHHDDANTSEENLEQLKGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRKFTLKHSMLRHRKKHNKMSNSEENFNSDDEAPVPQNFLNNNNSIINIPVNFWAKREHEGSDLISNLLGIHDKTIIDKMLLSKSAEDAARLLGVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -