Dcit010595.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125324.1:13705161-13719890[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.92 81 5.4 0.3 2 23 522 544 521 544 0.93 2 22 0.27 24 7.0 0.0 1 23 553 575 553 575 0.97 3 22 0.016 1.4 10.9 0.3 1 19 685 703 685 705 0.95 4 22 0.096 8.5 8.5 0.2 2 23 741 763 740 763 0.94 5 22 0.02 1.8 10.6 1.3 2 23 770 792 769 792 0.95 6 22 6e-05 0.0052 18.6 1.1 1 23 798 820 798 820 0.94 7 22 0.00076 0.067 15.1 0.9 1 23 826 848 826 848 0.98 8 22 0.023 2.1 10.4 4.1 1 23 904 927 904 927 0.91 9 22 0.034 3 9.9 0.2 1 23 936 958 936 958 0.98 10 22 2.4 2.1e+02 4.1 5.3 1 23 983 1006 983 1006 0.93 11 22 1.5 1.3e+02 4.7 0.1 3 23 1018 1039 1017 1039 0.90 12 22 0.016 1.4 10.9 2.3 2 23 1072 1094 1071 1094 0.94 13 22 0.00083 0.073 15.0 0.3 1 23 1120 1142 1120 1142 0.98 14 22 3.2e-05 0.0028 19.4 2.3 1 23 1147 1169 1147 1169 0.99 15 22 0.73 64 5.7 0.7 1 23 1172 1195 1172 1195 0.96 16 22 0.00035 0.031 16.1 0.7 3 23 1202 1223 1200 1223 0.96 17 22 0.08 7 8.7 0.9 2 23 1256 1278 1255 1278 0.92 18 22 0.81 71 5.6 1.3 1 23 1315 1338 1315 1338 0.95 19 22 0.095 8.4 8.5 0.1 2 23 1375 1397 1374 1397 0.94 20 22 0.24 21 7.2 0.9 1 23 1401 1424 1401 1424 0.97 21 22 0.00023 0.02 16.7 1.2 1 23 1429 1452 1429 1452 0.92 22 22 0.39 34 6.5 0.1 2 23 1460 1482 1459 1482 0.94
Sequence Information
- Coding Sequence
- atgtttagCTCTCCGTTTAACATTCCACCTTTCTGTTACAGACCCCGAGCCCAGCCGAAGAGATTAGGCGACGATGACATACTGCTCAGAAAAAGGCcgcacaagaagaagaaggctcgGCTGGACACAAAAAACAAACCGAGTGCTAAAAAGGTCAACGCCAAGTCCAAAGCTCGCGGTTCTAAATCGAAAGAGGTGCAGTTGAGCGACACCTCATGGGATGAAGAAGATGATTTGCCTCTTACCTTGTCCCCAGGCGAGTCGGCTTTGTTGCGAGGCAATAAAACGGGTTCCAAATTGAAAATCCGCACCCAGGAAGAGATCAACTTCGCGTATTCTACGTGCCGTCTCTGCGCGCGCTCTCGCGGATCCCACCTCCTCATCGACATCTTCGACCCCTCCATCGACCTCTCCTCTCTGATAGCGACCCTCCTGCCCATCAGCGTCTCGCGGAGCGACCGAAAGCCGCTCAAAATCTGCCAAACGTGCGCCATACGGTTGGAAAAGTTCGACTCCTTTTGCCGCTCCGTTAGAAGGAGTGATGCGTATTTCAACGCGCTTCTAGGACAGGAGAAAGATCAGGTTGGAGATGTAGAGGTCACCGAACCAAAGAATCCTTCTCAGAAAGTTAGTTTCAAGTCCGGAGTTGTTGTCCCGATAAAGCTTGTCATCAGAGCTGTCACATCtagtcaaaaccaaataaataatcaaacagAAAGTCAAGCAAATAGTCAGACAGATAATCAAATTGATTGTCAGACAGATAGTCAAGCAGATAATCAAATTGTTAATCAAACTGTGAAAGAGGAATGGACTGATAAAACTTCTCTCCCcctaggagaagaagaaaatcacgaAACCCCGTCTAGTGACGATTTACCAGACTCAGTCGTTCGCGCGTCAGTCGCCGATCCACCGATAAAGACCGAACCTTCGATAGAAGAGCCACCGGTAAAACCCGATCCGTCTTCGGAAGTGCTCGGGGATCCGTTGAAAATCCCGTCTAGTCAGACAGCTGAGAAGGAGGCAGTGAGAGGGAGGTTCCTACAGGAAGAGTGTGATATCAAAGAAGAACCTCAGGATGAGATAGAGGATCGTGTTGCGGACGACATACCCGGAGAGGGCGATATGTTTGAAACACACGGTGatttcaatatagGAGGAGGTCCCAGTGGTTATGGTACGTCAGGCGATGGGTACATGTCATACGGCGGTTCATCAGGCTACTCCCTGGCaggaggtgccgggttcgatacccagtCAAGCTATGAATCCAACGATGCTAACTACGACCAGGGTGGGGAATATCTCACTGAAGATTCCAAGGTGGGTATCCTGGGGTGTGGCGAATCCATGCAAGCAGCCCATTATCATTTGGCTCCACGCAAGAGAGGAAGACCGAAAGGATCGAAAAACAAGAATTTGACCCCGCATCAGTCCGGAGGTAGAAGTAAAGTGTTCGTCAATGATCAGTAtgagGTGAACTTCATGCATGAGTGTCGGGAATGTGGATCTCAGTTCGCGGACATCCTGAAGCATAGTCTGGAAACTCACCTCTCGTTAGAATGCCCCTGTTGTTCTGAGTCCTTCAGTGAACGACCGGCCCTGATAGAACATTTCCAGAGTGTCCACAACACCAAGTCTCAAGTGATCTACTTCCCATGTCCTCTATGTCCGGATAAGCTGAGAACCGAATCCGAACTCGGCGCCCATGTAGCTACCCATGCCGATACCATATTGGCGCCTTACGAGTGTTTCTCCTGTGACTTTTCCGATAACGATTTCATGgcCATGGCCAAGCATATTGTGGAAAGTCACTGTGAGGTGACGAGTGATAATAGATACGAGTGTCCTATATGTGAAGACCAGGAGACTATGGCCTCCTCATTCCACGAGCTATGCACCCACCTGTACGAGTCACACATTCCGGAGGAAAAGGTGAACCTCGTATCGTGCCCAGTGTGCAACGTCCGACTCGGGAACGACACGGCCCACATTCGGTCCCACCTCCTCACTCACACGACAAGACAAACGTTCATTCGGCCCAAATATTACCGGTGTCCGGCCTGCAATGCCGGCTTCAAGTCTCAGATCAACCTGGTCAAACATGCGTGTCCCAATATAGTCAACAACCGGTGTGAGGAGTGTGATATTAACTTCCCGAGTAAGATGAGACACACATTTCATCTACAACATCATCTTGAGGATCCTATGCAACTCAAATGTGATATATGCTTCACGGATTTCGATGATGAGAACAGCCTATACGATCATGTTAGATTCATCCACGTGCAAGACAACCAACTCAAGTGCACGATCTGCAACAAGGAGAACTTCAAGAACCAGCTGTCTCTCTCCATTCACATGCGCTACCACGAGAACGTTCGCGAATACGAGTGCGAAATCTGCAAGAAGAAGTTCATCAACAAGTCGACCCTCAAGGAGCATTCCGTGTCCCACATGAGCGTCAAACCGTTTAAGTGTGAGATTTGCGGGCATTATTTGTCACGAGCTTCGAGGTTGAGGGCTCACCTGAAAGCGCATAGCGTTGTGGCGAGCAATAACAAGGTGCAGAATTGTAAGAAGTGCTTCAAATGTTGCCAGGTGTTCCCCAGTAACGAGGAAAATCTACGCAAGCACTTCGAGAAGGTCCACTTCGATTTGGAGTTTGACGAGGCGCACTTCTACGACGTTGTGCTCAAGTGTGTGTACAGGTGTGAGTTTTGCGATTCTTGCTTCAACGTCCCGCATGAGTTGAATCGTCACCGCTTCGCCAATCATCCGGAACCGGACTCCCCAACTGCGTTTTCTTGTATGGTATGCGGCGTCGCATTCCCGGCCTATTCCCGTCTCACGACTCACAAGCTAACGCACGGCATTAATACGGAGAGTTTGATTATCACTGATGAGGATGAAAAGAACGATAGGTTTCGTATCGTGCAATATTTCCTGTGTGAGTTGTGTGACAAGACTAGCATTCACTACACGTACCTCTGTCTACATAAGAAGTTGAAACATTCAAACCTCACCTATGGAGgCGAATCTCCAGTGTGCGAGCCGTGTAATTTAACATTCAAGAACGAGTGGCAATATCTCGTTCATAACCGTGCAGTACATGAACTACCTCCCGAGCCTAACTCAGGAGCCGGCTCTGTGCTGCAGAATAATCCGTACCCACCCTTACGGAAGGCTAAGCAGCATGTCAAGTCAGTCACGTGTAGCGTATGTGAGAAAGCGTTCTCGTCGAAAGAAAACTGCAAGGCGCACTACACCAGACAGCATGGGAACAAGGAGCCTAAAGAACCCAAGTCTGGCGAGGGTCTACCTGCCCTGGAACAACTGCTGAAGATGAAGCCTTATACTTGTGAAATATGTTCGAAGACCTACACCGTGGAAGGGTCGCTACTTACGCATTACGATATGCATTCAGGCGAGTTCTACCAGTGTGACGTCTGCTTCAAGGAGTTCCGCTCCAGCGTGACGCTCCGCAATCACACGCGCCGTCACGACAACTTCTCATGCGACGAGTGTTCCGTAGAGTGTCAGGATCTCAACGCGCTCCGCATGCACACGCTGCGTGAACACGGCTACAAGATCCTCGCATGCGAGAAATGCGACGTGAAGTTCACGCACAAGGCGCTCCTAGCGGAACATATCAACACTAAGCATAACACGGACGTGACGTTGAAATGTCAGCTGTGCAATGTTGCCGTGTTGATTGAGgaAGTTCAACAACACCTGGAGGAACACAAAGTAGTCATCATACGGTGTGAGACATGCACGCGTAACTACGAGTCCTTGGAGTCCCTCACCACTCATCTCTCGTTCAAACATAGCAACCAATTCCTTATGAAATGCACCAACTGCAATGTCTTAGTCCCGCGGGATGAAATCCTGCCGCATCTCTCCATACAGCATTGCCAAGGCACCACGCCGTCCATCTACGAGTGTAACCAATGCAAGGAGAAGACGAACGACATGACAACCATGTTGAACCATTACAGTGTCAAGCACTACATGGATATAAACATGAGCTGCGTGCCGTGCGATGTGCTGTTCCATAACAAAGCGACGCTGTACAAGCATCTCTACCTGGAGCATAAGGCGACTAGCCTTTCTATCCAATGCAATATGTGCTCCCTCGTCCTGGACAGCAAAGAGAGCTTAGTCACCCATATCTCACAGACACACACCCTTATGTTTACCTGTCGTCGGTGCCCTAGCACATTTCTCAACAGTGCAACCCTGTCGAAACACGTTAAGATGGAACACAACTCGAAATCTTACCAGTGTAACGAGTGCCCGGAGTCGTTTGAGCGGCTGAACAAGCTGAAACGACACAAGTTTCAGGCACACAATGATTCTGTACATCAAATCCAATGTCCGTACTGTATTACTGATTTCTCTGAAGATAAGAACCTCATTCAGCATATTGTCAGTGTGCATCTGGGCAAGGAGGGCACTGCGCCAGCCCGCACCTAA
- Protein Sequence
- MFSSPFNIPPFCYRPRAQPKRLGDDDILLRKRPHKKKKARLDTKNKPSAKKVNAKSKARGSKSKEVQLSDTSWDEEDDLPLTLSPGESALLRGNKTGSKLKIRTQEEINFAYSTCRLCARSRGSHLLIDIFDPSIDLSSLIATLLPISVSRSDRKPLKICQTCAIRLEKFDSFCRSVRRSDAYFNALLGQEKDQVGDVEVTEPKNPSQKVSFKSGVVVPIKLVIRAVTSSQNQINNQTESQANSQTDNQIDCQTDSQADNQIVNQTVKEEWTDKTSLPLGEEENHETPSSDDLPDSVVRASVADPPIKTEPSIEEPPVKPDPSSEVLGDPLKIPSSQTAEKEAVRGRFLQEECDIKEEPQDEIEDRVADDIPGEGDMFETHGDFNIGGGPSGYGTSGDGYMSYGGSSGYSLAGGAGFDTQSSYESNDANYDQGGEYLTEDSKVGILGCGESMQAAHYHLAPRKRGRPKGSKNKNLTPHQSGGRSKVFVNDQYEVNFMHECRECGSQFADILKHSLETHLSLECPCCSESFSERPALIEHFQSVHNTKSQVIYFPCPLCPDKLRTESELGAHVATHADTILAPYECFSCDFSDNDFMAMAKHIVESHCEVTSDNRYECPICEDQETMASSFHELCTHLYESHIPEEKVNLVSCPVCNVRLGNDTAHIRSHLLTHTTRQTFIRPKYYRCPACNAGFKSQINLVKHACPNIVNNRCEECDINFPSKMRHTFHLQHHLEDPMQLKCDICFTDFDDENSLYDHVRFIHVQDNQLKCTICNKENFKNQLSLSIHMRYHENVREYECEICKKKFINKSTLKEHSVSHMSVKPFKCEICGHYLSRASRLRAHLKAHSVVASNNKVQNCKKCFKCCQVFPSNEENLRKHFEKVHFDLEFDEAHFYDVVLKCVYRCEFCDSCFNVPHELNRHRFANHPEPDSPTAFSCMVCGVAFPAYSRLTTHKLTHGINTESLIITDEDEKNDRFRIVQYFLCELCDKTSIHYTYLCLHKKLKHSNLTYGGESPVCEPCNLTFKNEWQYLVHNRAVHELPPEPNSGAGSVLQNNPYPPLRKAKQHVKSVTCSVCEKAFSSKENCKAHYTRQHGNKEPKEPKSGEGLPALEQLLKMKPYTCEICSKTYTVEGSLLTHYDMHSGEFYQCDVCFKEFRSSVTLRNHTRRHDNFSCDECSVECQDLNALRMHTLREHGYKILACEKCDVKFTHKALLAEHINTKHNTDVTLKCQLCNVAVLIEEVQQHLEEHKVVIIRCETCTRNYESLESLTTHLSFKHSNQFLMKCTNCNVLVPRDEILPHLSIQHCQGTTPSIYECNQCKEKTNDMTTMLNHYSVKHYMDINMSCVPCDVLFHNKATLYKHLYLEHKATSLSIQCNMCSLVLDSKESLVTHISQTHTLMFTCRRCPSTFLNSATLSKHVKMEHNSKSYQCNECPESFERLNKLKRHKFQAHNDSVHQIQCPYCITDFSEDKNLIQHIVSVHLGKEGTAPART
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -