Dcit035366.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diaphorina citri
Gene Symbol
zbtb8a.2
Assembly
GCA_000475195.1
Location
CP125332.1:9820502-9822847[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0025 0.22 13.4 0.1 1 23 9 32 9 32 0.96
2 16 0.61 54 5.9 0.1 1 23 115 138 115 138 0.95
3 16 0.35 31 6.7 1.7 1 23 229 252 229 252 0.93
4 16 0.0049 0.43 12.5 2.4 1 23 311 334 311 334 0.96
5 16 0.00013 0.011 17.5 5.7 1 23 339 362 339 362 0.97
6 16 0.0011 0.098 14.6 0.1 1 23 389 412 389 412 0.95
7 16 5 4.4e+02 3.1 0.3 1 23 418 441 418 441 0.90
8 16 7.6e-06 0.00067 21.4 0.2 1 23 480 502 480 502 0.98
9 16 0.057 5 9.2 3.0 1 23 508 531 508 532 0.96
10 16 0.0023 0.21 13.5 0.6 1 23 556 580 556 580 0.98
11 16 0.00046 0.04 15.8 0.5 1 23 586 609 586 609 0.97
12 16 0.0025 0.22 13.5 0.9 1 23 614 636 614 636 0.98
13 16 0.00022 0.019 16.8 3.4 1 23 642 664 642 664 0.98
14 16 0.00018 0.016 17.0 1.0 1 23 670 692 670 692 0.98
15 16 0.0014 0.13 14.2 4.6 1 23 699 721 699 721 0.97
16 16 0.02 1.8 10.6 2.3 1 23 727 749 727 749 0.97

Sequence Information

Coding Sequence
ATGGGGATCAAATCCACGGGGTCTTTTATATGTTGGTACTGTAACTATGGGCTCGAAGATAAACGACAATTGGAAATTCATATTAAAATAGAGCATGGCCAGCTTGTGTATGGACAGAGCGAGTGGTATGGTTGCAGAACATGTTTCAATATGCTGTACAGTCGACGTCAGGACATTATAAGACACATGTTACATATTCACAACGAAACCATCATACGACCCGAGGACTACCTCGTCACCTCTATTAGCGACATTAACCTTCCCTGTGAGGTATGTGGGGTCAAGAATCTTTTTGCCAAGTATTGCAAAGCACACAACTCGTATAACGAAGAAACAAATAGTTTTAACTGTAAGTTTTGCGACGATGTGTACGCTGACAAGAGAATTCTACAAGCTCATGTCAACATTGAGCATGGTAAGGAGGTACATGATGATGTAAACTTTCAATGTTTCATGTGTAAGATATGTTGTGATCAGCTTTATTTGGGTCATGAACAATTTCAATCTCATCTCCGTGAAACGCATGGTGAGTCTCATGTTGTATTTGATAGTTATGTAGTGACGTCATTGGATCAAATATTGCTCTCTTGTAAACTTTGTGGTGAACCTTGTGTATTCTCTGGTTTTTGTCGTGAGCATGATGCGAATGTTAACATTGACAATTGTAGTGAACATCCCGAGTCTCATTCATGTGAACCTTGTAATGTCATGTACACGGATTGTAATGATCTATGGATTCACATGTTCTCACAGCATATTGATGAAACGCTCTATTGTAATTTGTGTGAGAAGAGCTCAGAGAGTACTATTAGAGCCCCTAGCATGTTGATGAAACACTGGAGGCGAGTACACAAGAGTGCAGGTGTTGATCTCCTCACTGAGGAGGAGTTGCGTGAAAAATCCGCAGTAGAAATTGACGGTGAAATTAAATTCCAATGTCCAGACTGTCATACAATGATGAAAAACTTTGCATATCTCAAAAAACACGTCCGAGATAATCACTCTGGAGAAACTTTCTCATGTGACGAATGTTCAAAATCTTTCACTACGAAGAAATGCCTTCGTGAACATTACAAGAAATTACACACAATAAGAATTCGTTCAAGTAGAGAAGAGAATGatatgaaaaagaagacgatGGTGTATGTGGAAGGTGTAGTGAAGTATAAGTGCCCGGAGTGTGGCTTTATGGTGAAACGATTCCAGGGACTACGAGAACACATTGTGTCTGTACATGCTCAAGTCAAAGATCATGTGTGTATTGTATGTGGTGCTGCATTTGGTTTAGCTAGAAGACTCAAAACCCATTACATACGAAGACATACTGTGAATATTCTAACTCAGGCAAACCATGACAACGAAGATAAGCTTGATGTTACTAAGATAttcaatgtaaacaaagaaGACTGTCAAATAATGCAGGGGGAGAAAGTGAAATTCAAATGTCCCGAATGTCCTAGGAGCTATGGAAACTTTTCTGAATTGAAGAAACATCTAGCAGTTCATACTGGCGAGAAACATTTCGTGTGCAGTGTGTGCCAGAGAGGTTTCTTCATGAAGAATAGGCTGAATGAACATTACAAGCGAGTACATCACATGAACTTTACATCCAGAGATCATGATCTAAGACGGGAAACAGAAACGAATGTAGATGGCGTTCGAAAATACAAATGTCCTCATCCTGGGTGTCCATCCAGTTTCCAAAGATTTAATGCTTTGCAGGAACATATGCTTTCACATACGGGCGAAAAACCCTACACTTGTGAAGCATGTGGTAAATCTTTCCCCTTAAAACGGAGACTCAATGCCCACTATAACAAGTGGCATTTGGGTAAAGGCTACCGATGTCACATATGTGGCAGTACCATGAGTAACGCTGCCAATTTCAAAGATCATCTGGATAGTCatagaggagaaaagaaatacaCGTGTGAAACTTGCGGTACAGGGTTTGCGTACAAGTCCTCGCTTTACCATCACAGGTTCACACATATCAAAGATCGAACTTATCCGTGTACGTATTGCGAACGGAAGTACCAGAGTCCAAAGACACTCAAAGAGCATTTGAAAGTACATACAAGTGGTGATGTGCGGCATATATGTCAGACATGCGGCAGTGAATTCCACACGCGCAAGAACCTCCTAACACACATTAGAACTCACAATACAGACCGAACCCATGTGTGTGAACTTTGCAATGCCAATCTGAAAACCAGGCGAAGTTTACTTCGACATTATACGACACATGGGACCCAGCTAGCTGCCATTGCTTTCAATAATAGTCAGGTTCCACCCCCTCCCTCTCATCCTGTACAAATGAACCCGAACCCTCCACCAATGTATTAG
Protein Sequence
MGIKSTGSFICWYCNYGLEDKRQLEIHIKIEHGQLVYGQSEWYGCRTCFNMLYSRRQDIIRHMLHIHNETIIRPEDYLVTSISDINLPCEVCGVKNLFAKYCKAHNSYNEETNSFNCKFCDDVYADKRILQAHVNIEHGKEVHDDVNFQCFMCKICCDQLYLGHEQFQSHLRETHGESHVVFDSYVVTSLDQILLSCKLCGEPCVFSGFCREHDANVNIDNCSEHPESHSCEPCNVMYTDCNDLWIHMFSQHIDETLYCNLCEKSSESTIRAPSMLMKHWRRVHKSAGVDLLTEEELREKSAVEIDGEIKFQCPDCHTMMKNFAYLKKHVRDNHSGETFSCDECSKSFTTKKCLREHYKKLHTIRIRSSREENDMKKKTMVYVEGVVKYKCPECGFMVKRFQGLREHIVSVHAQVKDHVCIVCGAAFGLARRLKTHYIRRHTVNILTQANHDNEDKLDVTKIFNVNKEDCQIMQGEKVKFKCPECPRSYGNFSELKKHLAVHTGEKHFVCSVCQRGFFMKNRLNEHYKRVHHMNFTSRDHDLRRETETNVDGVRKYKCPHPGCPSSFQRFNALQEHMLSHTGEKPYTCEACGKSFPLKRRLNAHYNKWHLGKGYRCHICGSTMSNAANFKDHLDSHRGEKKYTCETCGTGFAYKSSLYHHRFTHIKDRTYPCTYCERKYQSPKTLKEHLKVHTSGDVRHICQTCGSEFHTRKNLLTHIRTHNTDRTHVCELCNANLKTRRSLLRHYTTHGTQLAAIAFNNSQVPPPPSHPVQMNPNPPPMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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