Dcit023973.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125328.1:30793843-30798798[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.7e-05 0.0032 19.2 7.2 1 23 618 640 618 640 0.99 2 11 0.0001 0.009 17.8 4.2 1 23 655 677 655 677 0.98 3 11 0.058 5.1 9.2 5.3 1 23 684 707 684 707 0.91 4 11 0.006 0.53 12.2 3.2 1 23 770 793 770 793 0.96 5 11 0.0098 0.87 11.6 0.6 3 23 821 842 819 842 0.95 6 11 6.3e-05 0.0055 18.5 2.6 1 23 873 896 873 896 0.96 7 11 0.015 1.3 11.0 3.7 1 23 997 1020 997 1020 0.94 8 11 4.8e-06 0.00042 22.0 1.2 1 23 1034 1057 1034 1057 0.95 9 11 3.7e-05 0.0032 19.2 1.7 1 23 1138 1161 1138 1161 0.98 10 11 0.0055 0.49 12.4 7.0 1 23 1167 1190 1167 1190 0.96 11 11 0.015 1.3 11.0 0.7 2 23 1200 1221 1199 1221 0.97
Sequence Information
- Coding Sequence
- ATGGGTATTGCTTATCTCAACGACAGACGCAATGTGATCATGTATCGATGCTTTGTATGTCCGTATCTGTCTCGGCATAAGGaaaaaaCTAACGAAATCTCCACTACTCCAGAAAATATTGCGGATCATGTTGTTTCTACAGAGTCTTCCAATTTAGATGAAAATGTTGACAAGGATTCTACTGAAGATAATTTGAACATGGAAACCCAAATGGCCGGTGCTGAGGATTCGCAAGGGAATGAAATAGTCAGCGGGGAAAGTGTTGATGCTTCTAGCTCTGCTGTTCAAGTTAGAGATAATGAACAGACTGTTAGAATAGATAATGAATTAGAATCTAGTGTATTGAAACCTGCAGATACATCCGAAGTAGCACAAGATAATATAGAGGGGAATGTTAGTGTAAGCAGTGtggtaattaatttaaataaagtacTGGAGGAATCTAGTGCAGATAGTAATGAACCAAAAGAGAAAGATACTAGTGCCTCTGATAGCCACGGTACTAAGGATTCAACCCCTGGGAATAGTATTCTTGCCAAATATATTAATGAAACTCGACAAAGACATATGATTACTACAGGAAGCTTACAATTACAAAGAAATATACATTTGCTCGAACGAAATAATGTTCAAATCACTGAGAAACAAGGTCATATGTTGAATAGTAGTGTCTCTATTTATCCTAGTAAACCAAAATCTGTAGATTCTGCCAACGTGAGTGGACCAGACAGTGGTATTGGTCTTGTTAGAATGCAAAGCATTGTTCAACCTATGACTAGTGTACCCAGTCAGGGTTATAGACTAGCAGTACCTATGCAACATTTTGTTCAGTATCCTGGCAGAATGGTCGCTCCTTATTCTATGCCACAACATTCTCCAGGTCATATGCGTCCCGGCCACATACAGCTACAAGAACGATCCCAGCCTCCACCCTTGATACCGTTCCAAAACCAGATGGGTGAACATTTAAGATTACAAGGCTATGGTCATTTACAGATACAAAGACATCCTGCTGCTCAGTTGTCACCCCAAGGACAAAGctcattccaagaacgaatgaTGCAAATGAATATGCAAACCAGAATGCCGCGTATGCCAATGCAGATGCAATACCCAACATATTACGCCGGCCAGAATAGATTTCCAATTAGTACATCTCCTAGTGGCATACGAGAGAGACCCTTGTCAGATCCTAATTCCATGAATGTCTCCGGTATGCATGCTTATAGAATGAGTAATATACATGCTGAGAACTTTGAAAGATATCCGAGAAGCTATTCAGAACCACATGAGGAACCGACCAGGATGAATCCTGATATTTATCAGCAAGAAATGTATCATGATAATTCATATCGACCTGAAGCCTATCAAAGAGATCCGAATGTTAATGCGAGTGAAATGTTTTACAGAACTCTTCCAGCTGCAAGTGATAGACCAATGGAAATGTATCAAtctaaatcaaatcatggtGACACTATGAGACATCATACACCAGACGGTCAATCAGTGTTACAGAAAGAGTTGGAAGGTTCAGGTCGTGTGATGAATACGTCAGATAATGATAAGGTCATCACAAAACAGGAATTCATTGAAACTATAGACGAAGCTCATGATGAAACACTTGAAGACAATGAGTTTGTAGATTTCGAAGAGGCATTCAGTTCAGAGCAACGTGAAAGACaaacacaagaaggagaaaatttcgAAGATAACAATATAAGCATTGAGCATTTCCTACAAGTAGATTATAGTGATAATGCGAATAACCAATCCTCTCACAATGAAGAAGATCAGCAGCAACAACAGCGAGCCCAACCACTTTATCAAATGAATAGACAGAAAACAATCATTTTCAAATGCAAATATTGTAAGAAGAAGTTCTTCCACAAGAGAGAGTTGGAAAAACACATGATAACTCATTCCACATACACTAGAGTCAGAAGTGATGGAAAGAAACGAGACTTCCCTTGCACTCTATGTGATTGTTCCTACATCAGGAAAACACATCTAGAACGACACATGCTATCTCACATGAGAAAACAAGATCAATACAAATGCGGGAAATGCAATTTCTTCTTTGTTCACCGAAGACATTTAGAAATTCATAATTTACAAACACACTCTGGTAGATCTGAAGATGATGAGATTAATGCTAGATTTGATGAGCAAATCCAAATTGTATCTGTTGATCCTAATGCTCCGGATTTCGGCAATGATTCACAAATAGCGATTGCTAAGATTAAAGAAGAAATGATTGATATACCACAACGTAAACCTTTACACAAGCATTCAAACGTGAAGCGATCATTCTTCTGTCAACATTGTGGTAGAGCATTCTTGAAGAATCAGTATTTAAGAGCGCATATTCGTAATTTCCATGATGGAAACTTCTCCGAAAATACTGCAAGTGAATTGGTTGCTGATACGTCAACGCCAGTTCTCCAACCAAAGAATCTTTTCTGTCCAATCTGCGGCCAAGGCTTCATCAAAATGAAATACTTCAGATCCCATTGGAACAAATTTCACGAGCATGATCATGAAACGAGGATTGAAGTTGGGAAGAAAACAAATCCTGTACCTTTGAGTGCGCCACCTCCTCCATTAGTGAAGAAACCATTCGTCTGTCATATTTGCAACAATGGATTTTATCATCCGCAGAATTTAAAACGACATATTAGAGATGTCCACTATAAAAAGAAACTGGAGGCTAAGGATAATCAAGCGTCAAATAGTTCGGATAGTGGCATAACTGTAGATCCAGCCTTGCAGGTGCAATATGCACATATGGCACCTGTGAAAACTAAACCGACCAGAAGTCTGATTCAAGATGAGCAGCAACAAGATGAACAAGAACAGGAGCAAGACCAATCCATCACGCTATCAAGTCTTAGTTCATCCAACATCAATGAGTCTCAACTGATGGGCTGGAACATAGAAGATGATGGAACGCAAGGCCCCTCCACCTCACACTCTGCAGAAGAACGTCCCTTCAAATGTACTCTATGTGATAAACGATTCTTCCGACTGTTATTCCTCAAGCGTCACTTTGGTACAAGCCATGGCGTGCTACACCCAGACACAACAGAAGATGATTGGAGTTTTGAATGTAAAGCATGTGGGAAACGATTTGCTCGAAATGATTCCTTGATTCGGCACATGAAATTCAAACATAAGAAACTATTCCGTGCAATGAGAGCCGAGAAGATAAGACAAAACTATGAGACAGCGAATAAAgcacaacaagaagaaaataaagtagAAGAGTCTCAAGGTTTAACAGGACCAAAGATAGTGAGTGACAAACAAGAAACTGctggagaagaaggaacagaaacTACTCAGACTGAAACTGATCCATTTAAAGATATTCCCAATGAAGCACCAGCTGCTCCAACTcccaaaataaaaatataccgCTGTTCAACTTGTAATGAAAGCTTCCGTAGTTCATTAGAGTATATCAAACATCAGAGAACAGTACATGCGAGACAaagaaaacacaagtgtaaAGTTTGCAACTTCAAGTTCATGCAATATTCCCACATGAGACGACACATGAACCAAGTGCATTCCAAGCAACACTCAGGAGGAACCAAGAAATGTACCAAATGTGAATTTACTGCAAGTAATAACATTGCTCTTAGCAATCATATGAGAGCACACACAAGAGAAGAAGCTAGTAAACGATATCGCTATCCTGAACCGGAACCAGAAGATATAGACAGTCAACCTGAAGAGGATATAGAATATCAAGATATAGAAGAAATTGAAAcgcaacaagaagaagaagcaattgatcaacaacaagaagagatggaaagtCTACAGGAAGAAGGAGTAGTAAGCGAACAAGAAGAACGAATAGAAATGCATCAAGAAATTGAAAGtcaaggagaagaggaaatagaaagtCAACCAGATGACGAATTGGAAAGTCAACcggaagaagaaatggaaagtgaaaacTCTCCAGAGAATGCAAACGATAGTATGGCAGAGACTTTTAACGAGAGCCTTGCTAAAACACTAGATGAAACTTTAGCAGAAACCATGGCTCAAGTCGAAGAAAACATCGATGAAAATTTAGATGACTAA
- Protein Sequence
- MGIAYLNDRRNVIMYRCFVCPYLSRHKEKTNEISTTPENIADHVVSTESSNLDENVDKDSTEDNLNMETQMAGAEDSQGNEIVSGESVDASSSAVQVRDNEQTVRIDNELESSVLKPADTSEVAQDNIEGNVSVSSVVINLNKVLEESSADSNEPKEKDTSASDSHGTKDSTPGNSILAKYINETRQRHMITTGSLQLQRNIHLLERNNVQITEKQGHMLNSSVSIYPSKPKSVDSANVSGPDSGIGLVRMQSIVQPMTSVPSQGYRLAVPMQHFVQYPGRMVAPYSMPQHSPGHMRPGHIQLQERSQPPPLIPFQNQMGEHLRLQGYGHLQIQRHPAAQLSPQGQSSFQERMMQMNMQTRMPRMPMQMQYPTYYAGQNRFPISTSPSGIRERPLSDPNSMNVSGMHAYRMSNIHAENFERYPRSYSEPHEEPTRMNPDIYQQEMYHDNSYRPEAYQRDPNVNASEMFYRTLPAASDRPMEMYQSKSNHGDTMRHHTPDGQSVLQKELEGSGRVMNTSDNDKVITKQEFIETIDEAHDETLEDNEFVDFEEAFSSEQRERQTQEGENFEDNNISIEHFLQVDYSDNANNQSSHNEEDQQQQQRAQPLYQMNRQKTIIFKCKYCKKKFFHKRELEKHMITHSTYTRVRSDGKKRDFPCTLCDCSYIRKTHLERHMLSHMRKQDQYKCGKCNFFFVHRRHLEIHNLQTHSGRSEDDEINARFDEQIQIVSVDPNAPDFGNDSQIAIAKIKEEMIDIPQRKPLHKHSNVKRSFFCQHCGRAFLKNQYLRAHIRNFHDGNFSENTASELVADTSTPVLQPKNLFCPICGQGFIKMKYFRSHWNKFHEHDHETRIEVGKKTNPVPLSAPPPPLVKKPFVCHICNNGFYHPQNLKRHIRDVHYKKKLEAKDNQASNSSDSGITVDPALQVQYAHMAPVKTKPTRSLIQDEQQQDEQEQEQDQSITLSSLSSSNINESQLMGWNIEDDGTQGPSTSHSAEERPFKCTLCDKRFFRLLFLKRHFGTSHGVLHPDTTEDDWSFECKACGKRFARNDSLIRHMKFKHKKLFRAMRAEKIRQNYETANKAQQEENKVEESQGLTGPKIVSDKQETAGEEGTETTQTETDPFKDIPNEAPAAPTPKIKIYRCSTCNESFRSSLEYIKHQRTVHARQRKHKCKVCNFKFMQYSHMRRHMNQVHSKQHSGGTKKCTKCEFTASNNIALSNHMRAHTREEASKRYRYPEPEPEDIDSQPEEDIEYQDIEEIETQQEEEAIDQQQEEMESLQEEGVVSEQEERIEMHQEIESQGEEEIESQPDDELESQPEEEMESENSPENANDSMAETFNESLAKTLDETLAETMAQVEENIDENLDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443230;
- 90% Identity
- iTF_00443230;
- 80% Identity
- -