Dcit044564.2
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- Znf131
- Assembly
- GCA_000475195.1
- Location
- CP125333.1:64973152-64989474[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0055 0.48 12.4 0.8 1 21 334 354 334 355 0.95 2 12 5.5e-05 0.0049 18.7 0.2 1 23 373 395 373 395 0.98 3 12 0.00033 0.029 16.2 4.4 1 23 401 424 401 424 0.97 4 12 0.00026 0.023 16.5 0.9 1 23 461 483 461 483 0.94 5 12 0.0047 0.41 12.6 3.4 1 23 490 514 490 514 0.98 6 12 0.32 28 6.8 7.5 1 23 518 541 518 541 0.96 7 12 0.00045 0.039 15.8 0.4 1 23 547 569 547 569 0.98 8 12 2e-05 0.0018 20.0 0.4 1 23 575 597 575 597 0.97 9 12 1.1e-05 0.00098 20.8 0.7 1 23 603 626 603 626 0.96 10 12 1.1e-05 0.00098 20.8 0.7 1 23 673 696 673 696 0.96 11 12 1.4 1.2e+02 4.8 5.1 1 23 702 724 702 724 0.98 12 12 0.59 52 6.0 2.0 1 23 730 753 730 753 0.97
Sequence Information
- Coding Sequence
- ATGGAATTTAAACATGACAACCTctcaattatttcaaaactGCAagctattgaggataaaatatcTGGAAACAAATTGAAAACTGAATCTttagagagtaagagaaagaacaaaacaTTCCATAAAGATTATGTTACATGGATATCATCAGAcgaagagaaggatgaggatCACAGGAGTAAAAAACCAAAGAAGAGGAAATCAAAGTTAGCAGACTCTGACTGTGCAGATGATAGTGATTATGAACCATACTATCTTCAAACTAATGAATTTGCTCCCAAGattaagagaggaagaggaagaccaaagaaacTCAAGTTAACTGGGGATAAGGTTCAATCATTATTGTCACTGTCTAAAGTACTATCTAAAGCTGAACTAAGAAACCAGAATCATCCAAGAGGCAAGACAGTAGAACCTTGTGAtaagataaagaggagaagaggaagaccaaggaaAATTGAAGTCTGTGGAACCGAGAGTGAATCACATGGAATTTTGGATATTGAACCTGAGGAGTCAGCTCAGGGGATATTTGAACTGTCTGCAGAGGTGGAGACTGAGGATCTGCTAAAGGAAGCCGAACTGTCGAGTACTGCACTACAAGCATTGGCCTGTGTCTATCAGGAGgacaagagagaagaaggtgaTGATTTAGGATTAGGTTCCAGACATCCTGCTGCTACTACTCCTACATCAAGCACATTTACAACACCTATCACTTCTAGCAATAGCAAAGTTCACTCCATGATAACCAGACGAAATAATCCATCCTTAAATAAAGTGAATACAACAAGATATTCTGCAATCAAACATCATGAAACAACTGCCAGTGAAAAACAAGAAGTGCTTGGTGACAAATTAGAATCAACTCCAGAAGTAAATTCCATATCAAATGAATTGGGAAATAATATGAAAACAGTGAGGTCCAGAGCACGAGGGGGCTACAGAGTGACCACACCTATCAAGCGAAAGTTCCAAGTTACTCCGGCCGAATGGTTTACGTGTGGGAAGTGTGGAACCATCTTCAAGTTTATCTCAACATATCGATATCACATGGATACAGAGTGTAATACTAAAGCTGTTCTCATggtgaaacagaaagaagagaaagggtaTCAGTGTCCTCAATGTCCAAAGCAAGTAGCAACCCGTACTAGTCTCATGGTTCATCTTCGTTTGCACTCAGGGGAGCGCCGATTCCCATGTGAGTATTGCTCGCTTTCCTTCTATCAGAAACATCATCTCAAGGACCACGTCAACAAGATTCATCTACATCCGAAAACATTCTCATGTAATAGTTGTGGTCAGACCTGGCTGGGATATACAAGCTGGAAACAGCATGTGGCTGcatgtagagagaagagaaggaaggaaactTTTCCTTGTAAGCGATGTGATGAGCGGTTCAGTACACGAGATGAGTTGATTTCACACTCGAGTTATCATGGTGGAGAGGAGAGACGTTATGTATGTAACCACATGCAATGTACTAGAAGGTTCCACAGTGCATCTCTCCTAGCACGACATGTGAGCACGCACGCTATTCAATACACGTGTCACATGTGTGGTCATATGTTCACCTGTAAGCGACGTCTCACACAGCACTTGGCTAGACTACACACAGGTAGCTTGTCCTATCCATGTACTCAGTGTCCTGGCAAGTTCTATTCTGCATATGAACTCCGACAGCATGTTAGACAGCATACAGATGAGCGACCATTCCCTTGTCCTGTATGTCAGAGGACATTCCGACGTAAGGCCACAATGGAGTCACATCTGATGTTACACACTGGAGCTAAACCATACGCCTGTACCGAGTGCGATCAGAAATTCAACAGGAATTCCAAACTAAAGATTCATTACAACGTGGCTCATTGTACGGGAGAGATGTATGAATGCTGTCATTGTGCTCGTAGCTTCCCGTGCAAGTCCTACCTCTTTGATatatgtattgtgatttgtgttgAGGCCACAATGGAGTCACATCTGATGTTACACACTGGAGCTAAACCATACGCCTGTACCGAGTGCGATCAGAAATTCAACAGGAATTCCAAACTAAAGATTCATTACAACGTGGCTCATTGTACGGGAGAGATGTATGAATGCTGTCATTGTGCCCGTAGCTTCCCGTGCAAGTCCTACCTCATTCCTCACCTGCGTGTTCATACCGGAGAGAAGCCCTATGCTTGTAACCTGTGCACAGTCCGATACTTGAGATCATACGAGTTGGTTTTACATCTCAAGAAATGTCATCGAGAAGATGCACGCAATCCTTACGCGCCCGCGTTTGTCGATGTGAATACAGTTGCACAAGTGAAGCAAGAATATGAGGAGCTTCCTGTGAAAGTAGAACTAAATGAATTCGACCTTGATGTGAGTCGATAA
- Protein Sequence
- MEFKHDNLSIISKLQAIEDKISGNKLKTESLESKRKNKTFHKDYVTWISSDEEKDEDHRSKKPKKRKSKLADSDCADDSDYEPYYLQTNEFAPKIKRGRGRPKKLKLTGDKVQSLLSLSKVLSKAELRNQNHPRGKTVEPCDKIKRRRGRPRKIEVCGTESESHGILDIEPEESAQGIFELSAEVETEDLLKEAELSSTALQALACVYQEDKREEGDDLGLGSRHPAATTPTSSTFTTPITSSNSKVHSMITRRNNPSLNKVNTTRYSAIKHHETTASEKQEVLGDKLESTPEVNSISNELGNNMKTVRSRARGGYRVTTPIKRKFQVTPAEWFTCGKCGTIFKFISTYRYHMDTECNTKAVLMVKQKEEKGYQCPQCPKQVATRTSLMVHLRLHSGERRFPCEYCSLSFYQKHHLKDHVNKIHLHPKTFSCNSCGQTWLGYTSWKQHVAACREKRRKETFPCKRCDERFSTRDELISHSSYHGGEERRYVCNHMQCTRRFHSASLLARHVSTHAIQYTCHMCGHMFTCKRRLTQHLARLHTGSLSYPCTQCPGKFYSAYELRQHVRQHTDERPFPCPVCQRTFRRKATMESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNVAHCTGEMYECCHCARSFPCKSYLFDICIVICVEATMESHLMLHTGAKPYACTECDQKFNRNSKLKIHYNVAHCTGEMYECCHCARSFPCKSYLIPHLRVHTGEKPYACNLCTVRYLRSYELVLHLKKCHREDARNPYAPAFVDVNTVAQVKQEYEELPVKVELNEFDLDVSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -