Dcit005060.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- prdm10
- Assembly
- GCA_000475195.1
- Location
- CP125322.1:31168449-31178138[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.05 4.4 9.3 0.6 2 23 78 99 78 99 0.96 2 14 4.7e-05 0.0041 18.9 1.1 1 23 251 273 251 273 0.97 3 14 2.2 1.9e+02 4.2 1.2 1 12 279 290 279 292 0.92 4 14 0.34 30 6.7 0.0 2 23 311 332 310 332 0.96 5 14 0.0041 0.36 12.8 0.8 1 23 354 377 354 377 0.97 6 14 0.0016 0.14 14.1 0.4 1 21 385 405 385 406 0.94 7 14 0.0077 0.68 11.9 0.8 1 23 414 436 414 436 0.98 8 14 0.00065 0.057 15.3 0.3 1 23 441 463 441 463 0.99 9 14 0.015 1.3 11.0 3.1 1 23 469 492 469 492 0.98 10 14 0.00045 0.04 15.8 1.4 1 23 497 519 497 519 0.97 11 14 4.4e-05 0.0038 19.0 1.4 1 23 525 548 525 548 0.93 12 14 0.22 20 7.3 0.4 1 23 596 619 596 619 0.93 13 14 0.00088 0.077 14.9 3.1 1 23 641 664 641 664 0.97 14 14 0.007 0.62 12.0 5.4 2 23 703 725 702 726 0.96
Sequence Information
- Coding Sequence
- ATGCGATTCGTGCGCCCCGCTAGAAATGTTCAAGAACAAAATCTGACCCTCCATCAGAAGGGTAACGCTATCTATTTCACATCCATCAAAGATGTGCGAGTGAAACAAGAGCTCAAAGTGTGGTACTCACAAGACTACGCACAGAAACGATGTCTCCCCTCTCTCGAACAGCAAGCTGCTGCTCCATCCTATCTCTCGGAACTCCTGGATGGCCGTCTAGACAGAAGTGAAAAGTGTCCTCATTGTGACGACTACTTTACCAAGGAGGATTTGAGAGAGCACATTATATCCGTGCACAATGCTCCTTGCCAGGCGCCCGACCCCTCCACCAAactgtctccccctccctccctcgtcAAACtgccctcccttcctctcccctctctccctctcctccccgacgtgaaggaagaagaacgaGATGAGTTTGACCGGATTGATTTCTGTCAGAAGAAGGTGCGAATTTCCGAGCGGATTGCTTCTCAAAAGCTTACGCCACATACTGTGCTTACGTCACAAGGAAGTGTGCTTACGTCACAAGGAACCTTGCTTACACCACAAGGAAGTGTGCTTACGTCACAAGCAGGTGTACTTACGTCACAGGGAACCGTGCTTACGCCACCCGGTATGTCGCGGTTAGTATTGCCCCGGGAACTGCCTGCCGAGGTAATGCCCGAGGCAGAGTCTACCCCGGTACAAGAAGGCAGTACGGAGGAGGATACCTACCTTGTGGTTAGTAAGAGAAAAACTCACGAGTGTACCATGTGTCCGAAAGTTTTCCCCAAGGGTTTCAACTTGAAGCGGCACATTCTCTCCCATCTACCTGAACAACGATATCCATGTCAATTCTGCCAGAAGAATTTCACCCAGGTAACTATAACTTCCCGCACAATATCAACACCATCAATACTtGCGGGGGAGGAGGGGTGGGTGTGTGAGAAGTGTGCAGTGAGATTTGAAGCTGCGGACATGTTCCTGTTACACATGCAGTCCCATGATAATGACCATACTATGGGCAACGATGAGAACAAATTACACAATCAACATAAGTCGCCCATACATCAGTGTCCTGAGTGTAACGATCAGTTCATGACAAAAGACCAAGTGTTGCGACATATCATGAAGGCACATTCGCACAGAGAGAAACACCTGCATGTGTGTGAGAGATGCTCACGGGCGTTCCATAGTCAGGAATCCCTTGAGCGTCACATAGCTATGGCCAATGACACGAATTTACCGTTCCGATGTGTAGAATGCTGCAAGAGATTCAGTACAGCTATTGCCCTGCAAGGGCATGTCAGAGTGCATGGGAATCCAAGTTTCCAGTGTCCTATGTGTGAGATCCAGTTCGAATCTCTCCAATGGATGAGAAGTCATATCAAGACGCATTTAGTCAATGGGGTCTATCATTGTCCCAGATGTCCAAGAAAATTTACCGAGTACCAAGTGATACGAAAACATATCCGCACATTTCATAGCGATCGTCAGTTTGCCTGTCATATGTGTATCAAGGTATTCCCGTCCCAGGATAAACTGCGTATGCATATGTTAAGgcattCAGATCATCGAGAGTTCCTCTGTGCTAACTGTGGCAAACAGTTCAAACGGAAAGACAAGCTCAAGGAGCACATGGTACGACAGCATAATCCTGATGAAAACCAAAGCAAGGAACTACCAGCTCCCCCTCCTCCCCACCCTagtgaggagagggagaagaagaaaatattgACCAGGCCCGGGCGGTATCGGAGGAGGCGGGGGCGTAGTGACTATGCCAAGGCCCTGTACAAGTGCCACCCCTGTTTGGTGGGCTTCAAGCGGCGAGGGATGCTAGTCAATCATTTGGCGGCCCGACACCCAGACATTAGGCCGGAGTCTGTGCCAGAGCTTAGCATGCCGATACTCAAAACGGCGCGCGATTACTATTGTCAATACTGTGATAAGatttaCAAGAGCAGCTCCAAGCGAAAGTCtcatattttgaaaaatcatcCTGGGCAAGCTTTACCACTGAGTAACAGAATGAAGCTGGGCCGTTCAGATAGTGACGAGCTGCCCAATCCGAGCTTCTGTCAAACGGTGGGCAGTATCTCTGCAACACCGCAACAATGTCAATGGTGTCACAAGCAGTACGCTAGCAAGGCCAAACTGTTGCAGCATCAGCGGAAGAAACACCACGAGGATTTGCCTCCTGAACTCAGGGTGCCCCGCTTATCCAAACAATCGTCATCTGAAGACGATACTAGTCGTAGTGGTGTTCTCCCCTCTACCAGCCTGCATCCGTCTACTTCTGGTTTGAATTCGACTCACCATGTTGATATGACGTCAACCATGCAGTTCGATGTAAAACCAGATGCTGTTCTCTTCTCTGCCACGGAGTCTTTCACTAGCGATTCTCTTCCTAAAGAGGAACCTCCCTCATCCTCTACACCACTTACTCGAAAACCCTCACTCCGACCTAGGCTCATGAAACAAGATCGTGTACAAGAAGAAGATCTAGGCGAAGTAGAACAAGAACATATGGGAGAGAGAGCTctagagggaggagaaagaattctagagggagagaggattctgcaggaaggagaaggaggaacttTGGTAGAGATGGGCCACGAGGTATATGAACTTACCACGGAGTTGTGTCCTGAAACTTTGGAACTTCTTAGGAAGCAGTTTAAGCTGGATACCGTAGGAGATGCCCTTGGCCAGGCCCTCGAAGATTATACCTCCGGCAAAACCCTCACCACAGAGCAACTTCTCAAGCTGTTCGCTCTCAATGGCGTTACCATAGTAACCGAGCAGCCTAGCGACGCGACCACGAACTATGCTGTGTTCACACCTTATCCACCTCGTTGA
- Protein Sequence
- MRFVRPARNVQEQNLTLHQKGNAIYFTSIKDVRVKQELKVWYSQDYAQKRCLPSLEQQAAAPSYLSELLDGRLDRSEKCPHCDDYFTKEDLREHIISVHNAPCQAPDPSTKLSPPPSLVKLPSLPLPSLPLLPDVKEEERDEFDRIDFCQKKVRISERIASQKLTPHTVLTSQGSVLTSQGTLLTPQGSVLTSQAGVLTSQGTVLTPPGMSRLVLPRELPAEVMPEAESTPVQEGSTEEDTYLVVSKRKTHECTMCPKVFPKGFNLKRHILSHLPEQRYPCQFCQKNFTQVTITSRTISTPSILAGEEGWVCEKCAVRFEAADMFLLHMQSHDNDHTMGNDENKLHNQHKSPIHQCPECNDQFMTKDQVLRHIMKAHSHREKHLHVCERCSRAFHSQESLERHIAMANDTNLPFRCVECCKRFSTAIALQGHVRVHGNPSFQCPMCEIQFESLQWMRSHIKTHLVNGVYHCPRCPRKFTEYQVIRKHIRTFHSDRQFACHMCIKVFPSQDKLRMHMLRHSDHREFLCANCGKQFKRKDKLKEHMVRQHNPDENQSKELPAPPPPHPSEEREKKKILTRPGRYRRRRGRSDYAKALYKCHPCLVGFKRRGMLVNHLAARHPDIRPESVPELSMPILKTARDYYCQYCDKIYKSSSKRKSHILKNHPGQALPLSNRMKLGRSDSDELPNPSFCQTVGSISATPQQCQWCHKQYASKAKLLQHQRKKHHEDLPPELRVPRLSKQSSSEDDTSRSGVLPSTSLHPSTSGLNSTHHVDMTSTMQFDVKPDAVLFSATESFTSDSLPKEEPPSSSTPLTRKPSLRPRLMKQDRVQEEDLGEVEQEHMGERALEGGERILEGERILQEGEGGTLVEMGHEVYELTTELCPETLELLRKQFKLDTVGDALGQALEDYTSGKTLTTEQLLKLFALNGVTIVTEQPSDATTNYAVFTPYPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443193;
- 90% Identity
- iTF_00443221;
- 80% Identity
- -