Dcit043199.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125333.1:50838634-50844781[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.4 35 6.5 3.3 1 19 196 214 196 217 0.94 2 12 7.9 6.9e+02 2.4 0.3 2 19 222 239 221 244 0.91 3 12 0.046 4.1 9.5 2.1 1 23 361 383 361 383 0.87 4 12 0.0061 0.53 12.2 1.4 1 23 389 411 389 411 0.95 5 12 2.9e-06 0.00026 22.7 0.3 1 23 417 439 417 439 0.98 6 12 7.3e-05 0.0064 18.3 1.5 1 23 445 467 445 467 0.97 7 12 0.00051 0.045 15.6 1.4 1 23 473 495 473 495 0.98 8 12 1.9e-06 0.00016 23.3 0.5 1 23 503 525 503 525 0.98 9 12 0.0046 0.4 12.6 1.5 1 23 531 553 531 553 0.96 10 12 7e-05 0.0062 18.3 1.5 1 23 559 581 559 581 0.98 11 12 7.7e-05 0.0068 18.2 0.5 1 23 587 609 587 609 0.98 12 12 1.1e-05 0.00094 20.9 1.2 1 23 615 637 615 637 0.98
Sequence Information
- Coding Sequence
- ATGACAAGTCTCACGGAAGAACTGCaagagttcaatgaactgtGTAGGGTTTGTGCCAACAAAACCAACATACTTCTTGCTCTGAATATTTTTGAAGGTGATGGATCTAACAGAGCTATCTACAAGAAAATCAATGAGTGTTTACCCATTAAGGTACAGATGGAGGACAAATTGCCCAAACTCATTTGTGAAGAGTGTGTGTATAAATTGGATTTACTCAATGAATTCAGAGACATCAGCTCTAAAACAGAAGTATTCCTTACTAACCTTCTCAACAGAATATTTGTCACTGCAGAACAAAATGCCCAAGTGATGCTGggcCCAGGTCCCTCATGTCCTAGCTTggtaccaatcaatatgaatgaAGTTCTGAACAGTGAGGACAAGTTACATGAGCCATCCAGTATGGGAGGAAATCAGCTTAATGATGTGAACCCAACAATTGACAACACccaGTTGAGAAAGACAATAGACTTCAATACTAACACAAATGTCAAAGTTGAAAGCATTAACGGGTCATCCTACACCATCAACGGGTCCACCACTTACATAGTTTCCTCGGAACCTCTTGAAGGTGAAACTTTCTATTTCTGCGTCCTCTGTAGCAAGACATTCTCTCATAGGAACACATTTGACGCCCACTGTGCAGACTCTCATTGGGACAAGTGTGAACCTTGTGGCTTGCTGTTTACCTCACAGGAAGCATATGCCGTTCACTGCACGGAAATCCATTCGAAGCAGCCAACTTCTGAACCAAGCCAGGATGTGAACTACATACTCTCTCACATGGAAACCTACAGACAAATGCCTCAGCAGACCATTCCAGTCACGCCTGTACTCTCAAATGGTGTTCTGGTGGGTGCTTTAACCAATGGAATCACCAATGGTGTACCTGTGAACTCGGATGATGGGAACAAGGGAGGGGATGCACAAAGTAAATCTTCTGTGGTGAAAAGCGACTTGATCAAAGATCCGATTGCCAGTGATGACAATATGGAGGATGGGTATATggATGAACCCGACACTGATATAAATCCAAAGGAAGTGATTGATACAGGGAAACCTGAATCAAAATCATTGTACAAGTGTGATCGCTGTCCGAAGAAGTTCTCCTCTCTGGCCAAATATAACTTTCATGTTAGCAACCATGGTGTTGATAAACCATTTCAGTGCTTCAAGTGTGAGAAGAGGTTCCGATCCAAACTGGGTCTGGACGAGCATGAGGCCAAGCACACGGGGCGGTATGAGTACGAGTGTAATGCGTGCGGTAAGGGCTTCCAGAACAAATCCTATCTGATCGTCCACCAGCGTGTACACAGCACCGACAAACCCTACGCCTGCAAAACTTGCCCGCGAAGTTTCAAAACCAAACAGACGCTCCTGGATCACGAGAATCGGCACATGGGCGTGAAACCGTACAGCTGTGAGATATGTGGCCGAGGGTTCATTACGAAGGGCCTGTGTAAGAGCCACCAGAAGATACATTCGGGCAATGATAACCGGCAGTACCCGTGTCCCGTGTGCAAGAAGCTGTTTGTGAGCAAGTCCTATTTGAACACGCACCTCAGGATACACAcggGCGATAAGCCATTCGTATGTGAGCACTGCAACAAGGGCTTCCTGACCAAGGTGGATCTGAAAATTCACAACACCATGCATACGGGAGAGAAATCATTTGTGTGTGAAACATGCGGTAAGGCGTTCGCTAGGCGGGATGCGTTACGATGTCATACACGGAGCCATACTGGAGAGAGACCTTATAGATGTAACATCTGTGGTCAATCGTTCACTCAGTTCTCGCCCATGGCCATACACAAGCGTCTTCACACCGGCGAGCGACCTTACTCGTGTGAGTTGTGCAATAAGGCGTTCGTGTCCCGATCTACCCTGATGGTGCATAAGAAGAAGCATACCGTATGA
- Protein Sequence
- MTSLTEELQEFNELCRVCANKTNILLALNIFEGDGSNRAIYKKINECLPIKVQMEDKLPKLICEECVYKLDLLNEFRDISSKTEVFLTNLLNRIFVTAEQNAQVMLGPGPSCPSLVPINMNEVLNSEDKLHEPSSMGGNQLNDVNPTIDNTQLRKTIDFNTNTNVKVESINGSSYTINGSTTYIVSSEPLEGETFYFCVLCSKTFSHRNTFDAHCADSHWDKCEPCGLLFTSQEAYAVHCTEIHSKQPTSEPSQDVNYILSHMETYRQMPQQTIPVTPVLSNGVLVGALTNGITNGVPVNSDDGNKGGDAQSKSSVVKSDLIKDPIASDDNMEDGYMDEPDTDINPKEVIDTGKPESKSLYKCDRCPKKFSSLAKYNFHVSNHGVDKPFQCFKCEKRFRSKLGLDEHEAKHTGRYEYECNACGKGFQNKSYLIVHQRVHSTDKPYACKTCPRSFKTKQTLLDHENRHMGVKPYSCEICGRGFITKGLCKSHQKIHSGNDNRQYPCPVCKKLFVSKSYLNTHLRIHTGDKPFVCEHCNKGFLTKVDLKIHNTMHTGEKSFVCETCGKAFARRDALRCHTRSHTGERPYRCNICGQSFTQFSPMAIHKRLHTGERPYSCELCNKAFVSRSTLMVHKKKHTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -