Dcit044125.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125333.1:60808876-60810202[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6.6e-05 0.0058 18.4 2.3 1 23 53 76 53 76 0.97 2 9 7.2e-06 0.00063 21.4 4.6 2 23 82 103 81 103 0.97 3 9 7.4e-05 0.0065 18.3 3.8 1 23 109 132 109 132 0.97 4 9 0.0006 0.053 15.4 4.2 1 23 143 165 143 165 0.98 5 9 0.0027 0.24 13.3 0.4 3 23 173 194 171 194 0.95 6 9 1.8e-05 0.0015 20.2 0.4 2 23 205 227 204 227 0.96 7 9 2.4e-05 0.0021 19.8 0.4 2 23 233 254 233 254 0.98 8 9 3.1e-06 0.00027 22.6 2.8 1 23 260 282 260 282 0.98 9 9 7.7e-07 6.8e-05 24.5 1.0 1 23 288 311 288 311 0.97
Sequence Information
- Coding Sequence
- ATGATCCTATTGAAGTTTGCCAatgtcctattcgagcaATCATCAGAATGTGACACTAATCCTAATAAGAAGGATGAAACCAATACCGAATTGGAACGATGTACGGATTTGGTGGCTCATGGTGTTAACAAAGAATTGATAACTTTAAATAAACCTTTCAAGTGTGACGAGTGTGACCAATGCTTTGAAGCCAGAACCCTACTAAACAAGCACATCAAGCTAACTCACTTGAAAAAGGATCTTAGTTGTAATCACTGTGGTCGGTCTTTTAAACAACGGTGCAAGTTAATAGTACACATGATAACTCATAGTAATGAAAGACCTTTTGCTTGTGAACTTTGTGACAAACGATTCAAGCGTGATTTTCAACTAAGATATCACCACAGAACTATACATCAAGGgataaaaaagataaacaagaaatCATTCAAGTGTAATCTCTGTCCTAAAGCATTTCATTACAGGCAAGGTCTGAAAGATCATCAACATGTACACACTGGACAAAAATCACATTTATGTACCCTGTGTCCAGCAAGTTATGCTAACAAGCTTGGCTTACAAAATCATATAAAAGTATTTCATGAAGGTCAGGAAGTAGCACCAACACCTTCTCAATGCCAGCTTTGTGGAAAATCTTACAGTAGTACTCAAGCATACAATGCACATATGAGACTTATTCATGGTGATGCCAAACCAAAATGTGATATTTGTGGCAAGAAAGTGAGTTCGAAACAGTTTCTAGCTGTTCATATGAACATGCATACAGGAGAGAAACCCTACTGTTGTGAACACTGCGGAAAATCTTTTGCTAATAATAAAGTTTTAATAATTCATGTGCGAACGCATACTGGCGAATCACCTTATGTTTGTTCTATCTGTCCAAAATCCTTCAAACAAAGATCAGCACTCACTGGACATTACAAAAGCAAGCATCCTGGCAAAAAGCCATGA
- Protein Sequence
- MILLKFANVLFEQSSECDTNPNKKDETNTELERCTDLVAHGVNKELITLNKPFKCDECDQCFEARTLLNKHIKLTHLKKDLSCNHCGRSFKQRCKLIVHMITHSNERPFACELCDKRFKRDFQLRYHHRTIHQGIKKINKKSFKCNLCPKAFHYRQGLKDHQHVHTGQKSHLCTLCPASYANKLGLQNHIKVFHEGQEVAPTPSQCQLCGKSYSSTQAYNAHMRLIHGDAKPKCDICGKKVSSKQFLAVHMNMHTGEKPYCCEHCGKSFANNKVLIIHVRTHTGESPYVCSICPKSFKQRSALTGHYKSKHPGKKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443131;
- 90% Identity
- iTF_00443131;
- 80% Identity
- -