Dcit018673.3
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125327.1:761102-781642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.27 24 7.0 3.1 1 23 362 385 362 385 0.95 2 16 9.3 8.2e+02 2.2 0.3 1 10 400 409 400 423 0.82 3 16 0.18 16 7.6 0.6 2 23 430 452 429 452 0.95 4 16 0.22 19 7.3 0.2 1 23 492 515 492 515 0.98 5 16 0.071 6.2 8.9 2.4 1 21 521 541 521 542 0.96 6 16 0.001 0.09 14.7 0.8 1 23 549 572 549 572 0.97 7 16 0.96 85 5.3 1.7 1 23 580 603 580 603 0.96 8 16 1.5e-05 0.0013 20.4 0.1 1 23 609 631 609 631 0.97 9 16 1.3e-05 0.0011 20.6 1.6 1 23 638 660 638 660 0.98 10 16 2.8e-07 2.5e-05 25.9 3.5 1 23 665 687 665 687 0.98 11 16 7.3e-05 0.0065 18.3 4.7 1 23 693 715 693 715 0.99 12 16 0.00035 0.03 16.1 4.0 2 23 722 743 721 743 0.96 13 16 5.2e-06 0.00046 21.9 0.5 2 23 750 771 749 771 0.96 14 16 0.18 16 7.6 0.4 1 23 778 801 778 801 0.90 15 16 1.7e-05 0.0015 20.3 0.9 1 23 807 829 807 829 0.97 16 16 0.31 27 6.9 0.3 2 23 836 858 835 858 0.90
Sequence Information
- Coding Sequence
- ATGGCATATAGTGCTGGGCTGGATGGTTCTCAAGACACAGCGGGTGGTAATGCTAGTGGTGGAGATTCTCTACTGTATTCTATGCTGCTGCAAGGAAATAGGAATCCTGAGGAGTCATTAGAACCTCCTGTTGTAAGGCAACCAACTCAAGATAACTCAGCAGCTACATCTCCCACATCACCTACTCTACCTCCAGACCTGTCTGTATCTAGGGAAGATAAGTTCTCATCAGAGCCTGAAGACACTAGTGATGAGGAATCTACCAGTAGTAGACGTGATGGTGGTATGACCAGTGGATATTATGTGGCCGGGACTAGCAAACCATTGGCTACCACGGACCCGAGTAGTAGACGTGATGGTGGTATGACCAGTGGATATTATGTGGCCGGGACTAGCAAACCATTGGCTACCACGGACCCGAGGTTGGCTACCACGGACCCGAGAAGTTCTGAAGACACTAGTGATGAGGAATCTACCAGTAGTAGACGTGATGGTGGTATGACGAGTGGATATTATGTGGCCGGGACTAGCAAACCATTGGCTACCACGGACCCGAGACTGTATGAAGATTTTGACGATGTAGAACCTGAAGTCGATCCGAATGATGTGGAATGTGTATTGACTGAGACTTCGGATGTAGAATCTGTAAcccaggaggaagaagaagaggagggggaaggaggagaaggagaaggatctGGAAGTGAGAAACTGATGACCCGACTGTACAATATGGCCATGCAAGGTGGTACTGTTAGCCAAGTGAATACAAGTGATGATTCTGACGTGAAGCAAGATTGTCCTGATAATATACCGAAGAAACTGGGCAAATACCTGGTGCTCAATAATCTGGTTATATGTAGCAAAATTGGTTTAAATCAAATGGAGCACGCGCCCAATGGATTTCGCTGTGAGGTGTGCCATGGATATTTCGACTCCAGGGAGGGGCTCAAAGAATTACTGCGCCATATGCGTACACTACACGGtatcaaatgtaacaaggatacGCGACATCTTAGTAGTGTGTTTGATAACTTTGGTAGAATCAAAATGACGTCCTATCCAGAATATTGCGGCCCTATTCACGTGTGTCCGTTCTGTAGTCTACGTGCCTCCTCCAAGCGATTCCTACGCCGTCACGTGTTCACGTTTCACGGGGATACGTGGCTACTGGACGCACCGGCGGGTCCGCTCAGTTACGCATGCGGTCAGTGTAAGCGTAGCTTCTGGCATATGCGTGAGAGAGATGTGCATGAGATGTCGGAACATGAGGACGTGAGTCCGCTCCGGTGTCATATATGTGTACGGCCGTTCCTTAGGAAAGTGCTGGTGAACGAGCACATCCGTCTATCACATCCAGAAGAGAATGGCATGCATGGATGTGTTAATATATTCTATAATGAGAAAGTGCTGGTGAACGAACACATCCGTCTATCACATCCAGAAGAGAATGGCATGCATGGATGTGTGTCGTACAAATGTCGGTCCTGTGATATACTACTGGCGGATTACACAAGTCTGGAGAGCCATGTCAAAACTGAACATAATCACAATACAGTGTACAGGTGTTCGCATTGTGATCTGGGCCTCAAGAATATGAAGTCATTGCGGTATCATATCAAGCACGGCAAGGCGAGTCAAACGTTCGAGTGCGAGCTGTGCGGGCGAGTCACCTACTCGCTCCGCTCTCTCAACTCGCACCGCCGTCTCAAGCACGACTCCGCCCATCGCGCCCTGTTCAAATGTCGCCTGTGCTCGGATACCTTCGAGACCAAGGACGAACGTCAGCTGCACTATGCGAAACAACACGTGAATCAGAACCCGTTCATTTGTCCGGATTGCGGCAAGGGGTTCGCGTCGAAGTCTGGCCTCTACGGACACCGACAGGTTCATAAGGTTCAGGAGAATTTCTTCAAATGTCAGTTCTGTGGCAAGGAATTCACTAGGCGGGACAGTTATAATGAGCATCTGCTTATACATATGGGACCAAGACACAAGTGCCCACACTGTAATAAAGATTTCGTACAGAGGTCCAACCTTGTGCGACACATTCGAATACATACGggTGAGAAACCATACAAGTGTACCCACTGTGATAAAACATTCAGTGATAAGGGAGCGTGCAATTCTCATATTAGAGTGCACACAGGTGAAGAAACATGCGCCTGTCCGTTCTGTGGTCAGACCTTCTCTAAGAAACAGaaattgAAATACCATGTGAGGAAACACACGGGAGAAGGATTACTTGAATGTGACATCTGCAACAAGACGTTCACCAACTCGTATGCCCTGAAAGATCACAAGGCAACGCATGCGCGCTCCGCTCAGAACTTCAATTGTATCCAGTGTGGATCCGCCTTTACTGAAAACCGGTTCCTAAACCGCCATCTGTCCGTGGTTCATAGTGACATACCTTGCTTTGCCTGTCCCTTCTGTGAGAAGATATTCTCTCACCAGAAGGCGCTGCGCACGCACATCCTGATTCACGCAGGCGTGGCCTATCTGGAGTGTGCGTCCTGTTCGATTAAGTTCGTGTCGAGGACGAGTTTACACGATCATCTGGCCGCGGAACACGCGATCTCCGTGAATCACGAGTTCTACCACGCGAGCTTTATCTCACTTGAACCAGAACAGGTGGGCCTAGTCATGCCAAAGTTCACAGATGAGGAAGTACTAAATATGAGTAATCAGGAGAGAGATGAGGTGATGAGAGACTATTTCAATCAAGTCATTGAGGGCAAGATAGAGCTGGAAACTCAGTTCGAGTTCAAGCTCATTCAGAGGAACCGCGCCCCCGTGGACCCGGACAAGAAAGGCCTCATCGCCAAACTAAAACAGGAACAACGTAAATCTCGCCCCCTCCTAAGAAACGGGGTGGAGGACTACAGCGAGGATCACGACAATTACGATGCCCCCAGCGTTCACGAAACCTCCGTCATTAATCTATCCCTACGCAACCCATCCAACCCCACTAGACGAAGACAGAATAGTGGACATGAGAGTGGAGgtgaagaaatggaggaagaggaagaggaggggcaGATGCCAGTGGAAGCGTTTGTACAGGCGGAGATAGAAGagagtgaggaggaggaggttaaAACAGAAGatgagtga
- Protein Sequence
- MAYSAGLDGSQDTAGGNASGGDSLLYSMLLQGNRNPEESLEPPVVRQPTQDNSAATSPTSPTLPPDLSVSREDKFSSEPEDTSDEESTSSRRDGGMTSGYYVAGTSKPLATTDPSSRRDGGMTSGYYVAGTSKPLATTDPRLATTDPRSSEDTSDEESTSSRRDGGMTSGYYVAGTSKPLATTDPRLYEDFDDVEPEVDPNDVECVLTETSDVESVTQEEEEEEGEGGEGEGSGSEKLMTRLYNMAMQGGTVSQVNTSDDSDVKQDCPDNIPKKLGKYLVLNNLVICSKIGLNQMEHAPNGFRCEVCHGYFDSREGLKELLRHMRTLHGIKCNKDTRHLSSVFDNFGRIKMTSYPEYCGPIHVCPFCSLRASSKRFLRRHVFTFHGDTWLLDAPAGPLSYACGQCKRSFWHMRERDVHEMSEHEDVSPLRCHICVRPFLRKVLVNEHIRLSHPEENGMHGCVNIFYNEKVLVNEHIRLSHPEENGMHGCVSYKCRSCDILLADYTSLESHVKTEHNHNTVYRCSHCDLGLKNMKSLRYHIKHGKASQTFECELCGRVTYSLRSLNSHRRLKHDSAHRALFKCRLCSDTFETKDERQLHYAKQHVNQNPFICPDCGKGFASKSGLYGHRQVHKVQENFFKCQFCGKEFTRRDSYNEHLLIHMGPRHKCPHCNKDFVQRSNLVRHIRIHTGEKPYKCTHCDKTFSDKGACNSHIRVHTGEETCACPFCGQTFSKKQKLKYHVRKHTGEGLLECDICNKTFTNSYALKDHKATHARSAQNFNCIQCGSAFTENRFLNRHLSVVHSDIPCFACPFCEKIFSHQKALRTHILIHAGVAYLECASCSIKFVSRTSLHDHLAAEHAISVNHEFYHASFISLEPEQVGLVMPKFTDEEVLNMSNQERDEVMRDYFNQVIEGKIELETQFEFKLIQRNRAPVDPDKKGLIAKLKQEQRKSRPLLRNGVEDYSEDHDNYDAPSVHETSVINLSLRNPSNPTRRRQNSGHESGGEEMEEEEEEGQMPVEAFVQAEIEESEEEEVKTEDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -