Dcit038829.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125332.1:50585202-50588294[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00048 0.042 15.7 5.6 1 23 68 90 68 90 0.98 2 18 3.4e-06 0.0003 22.5 1.2 1 23 96 118 96 118 0.98 3 18 1.9e-06 0.00017 23.3 6.2 1 23 124 146 124 146 0.98 4 18 0.00044 0.039 15.8 8.3 1 23 152 174 152 174 0.99 5 18 0.0071 0.63 12.0 2.9 1 22 181 202 181 202 0.96 6 18 2.3 2e+02 4.1 2.9 1 13 233 245 233 247 0.88 7 18 0.5 44 6.2 0.2 1 23 278 301 278 301 0.94 8 18 0.0013 0.11 14.4 3.0 1 23 307 329 307 329 0.98 9 18 0.13 11 8.1 4.5 1 23 335 357 335 357 0.97 10 18 0.13 11 8.1 9.0 1 23 371 393 371 393 0.99 11 18 0.033 2.9 9.9 7.7 1 23 602 625 602 625 0.95 12 18 0.00011 0.01 17.7 0.9 3 23 634 654 632 654 0.95 13 18 1.3e-06 0.00011 23.8 3.3 1 23 659 681 659 681 0.97 14 18 0.0047 0.41 12.6 5.0 1 23 687 709 687 709 0.97 15 18 1.5e-05 0.0014 20.4 0.6 1 23 715 737 715 737 0.98 16 18 0.00018 0.016 17.0 5.2 1 23 743 765 743 765 0.98 17 18 3.7e-05 0.0033 19.2 3.6 3 23 776 796 774 796 0.96 18 18 0.0012 0.11 14.4 0.6 2 21 803 822 802 823 0.93
Sequence Information
- Coding Sequence
- ATGGCATACACTCTATCTAACATGAACTCGGCTGCCATGAACTCAGCCATGAGTCAAGCCATGAATATGTTCTCCCATTACAATCATCAGGAATATGTATTGCAAGAGTTGAACCCTCTCATGAAACAGCCCAAACCTGAGCCTATCCATGTGCAACACAATCCTGTAcccccaccccctccccctcagAATAATATGCCACATGAGTGTCAAACCTGTCATAGGAGATTTGCACAGAAACAAACACTCATTCAACATATGACCACACATACAGGCATCAAAGCTTTTCAATGTCAACTCTGCTTCAAGAACTTTACACAGCAAGGTTCTCTTCAGCGACACATGGCCATCCATAACAATGAACGTCCCTACACATGTGAGATCTGCCACAAATCATTCAGACAGAAGAGTCATCTGACAAACCATGCCAAGTCCCATGTGGATCAGAGAATGTACAAGTGTAACTTGTGTACCAAGTCATTCAATCGATCCGACCATTGCAAACGTCATATGCTTACTCATTCAACAAATCGGCCCATCTACACATGTTTCTTCTGCAATAAAGAATTCAAAGAGAAGTACCTCATGAAGACTCATATTAAGAAGAAGTTGTGTTTCCATGAAGCAACACGCACACGGCGACGTCGGGATAGTAATGAACCTCCCAGGGAACGAATCAAACGAGAGAAATTCCTCTTCCAATGTGAACATTGCTACAAGAATTTCCACCGAAGTACGAAGGAGTTTTCCAACAAGTACTTGGAAAAGTATTGTAAGAACTGTTGTCCTGTGTCCGAGTCGGAGAAGTTTACATTCTTTGAGGAGGAGGTGTACATCTGTTCAGTGTGTAATGGTCCTCCCTTCACCAAGCTCAAGACTTACAACAGACACATGGCCTTGCATAGTCAGGACAGAAAGTTCGAATGTGAAATATGTCACCTAAGATTCCAGAAGAAATATCTGCTCCGTTATCATTTGAATGTTCACAATAATGTCAAGGATTATCAATGTCAGCTGTGTGGACTTCAGTTCGAGACAATGATCAAGTTGCGTGATCATTACTGCCATCATGTAGAACATGCAGAGTACCTGGCTACCATTATGAAGATATACCAGTGCCATCACTGTAGTAAACTCTTTGTACGCAGAACCAACTGTGTGAAGCATGTACGATCTCATATGAATCTACCTCGGAGACCCAAAGGTCCTCGACCTAATAACCAACAAAACCTCAAAGAGGAAGACGAGAATGAAGATCTAACGAAACCTAACATAGGTCGTGTTGTACGCACAGCTAGCAATAACCGAGTAGTAGATGTTGATGAGTATGATCATTTCCTAAGTAAGAATAACTCTGCTGGTGctaatgatgaagatgatgatctCTACATGGGAGGGGATGACCATTCTTATGATGAGGATAGCACACAAGCCACCTCGGACTCGAAGAACTTTAACAATCAACAAGGATCAGGAGGCAACTACTATCAACAATTCAATAACTATTATTGTAACAAGTCCGGTGAGGGTGCAAATGAAAATCAACAGCAAATGTATCAACAAAACAACCAGTACAATCAATCAGGTAACAATCAAAACTATGATGGGTTTAATAATATGATGGTCAATCAGAATGGAAACCAAGCTCCCCCACAGACAGGACAAATACCAATCAGTTCATTACCTTTTGCAAACACAAGCAATAATATCCAGGCGTATGGTCCTGTCGAGATTGAACATCATGATATAGAAGACCTTATTATAACAAGTAAACCAAGGGATGATGATTCTAACCCAGCACCATTCCATTGCTATGTTTGTAAGAAGAAATATCGACACAAGAAACAATTAGTGAGACATTTCCAAGTGAATCACACAAATGATTATGACCGTGTGATCTGTGACATTTGTAACAAAGAGTTTACACACAAATCTTCTCTCGTTGAACACAAACTATTACACTTGCCGCCCAAACACGAATGTCCAGTGTGTCAGAAACGATTCAATCGCAAGTATTCGCTCAAACGACATATGTTACTACACAAGGGAGAACGACCATTCCATTGTACCCAATGTTCCGCGTCTTTCAATCATAAGAAATCCCTCGAAATCCACTTGTTAAAACATCAGGGCATTCTCCCGTTCGAGTGTAACATATGTAACAAGCGTTATGTAGACAAGGGAACACTGAGTCGGCATTACCTGGTGCATTCCGGAGAAAGGAAGTTCGTATGTCATCTGTGTGATCTACGCTTCTCACAGAAGATACATCTGAGTAAACATTACCTTACGCATgatgaaatagagaagaagtTAATACTGGACTGTCATGTGTGTGGTAAGAAGTTTTACACCAAGTTCAACTTTAGTCGTCATCTCGAGACACATAATAAGAAGAGAAGTGTTAAGTGTGACATGTGTGACAAGACATTCAAGTTTGAGAACGGGTTCCAACGACATctggagaaaggaaaatgtaaaggcAAGACAGCAACTATGAAACGATCTGGAAGTAGAaagcaaagaaggaagaagaaggtgcaAGTAACAAGTGATGAGGAGACAAGTGAAGATTCTATGATTGTGAGGAAGCGaaggaaacagaagaaaatgaaaaagaagagaaggaagaagaggaagcatgTGACATCaagtgaggaggaagaggaggaggattatgatgaagaagaagaaggagagggagaggaattaCCACTGGAAATCAAAGCAGAAGCAGAGGAGAATAatgaggtggaggaagaggagagggatgTGAAGAATGTAGCGCATATTAATCCTGACTATAGCGAGAACTTTGACTCGGAAGTAGAAGAGTTGTCTAGTAACAAGAGACTCAAAGTGAAGAGTGAAATGTCTACAGGTGCTCCATTTAGTCATGCACAGTTCAGTGAGGCTCCAGCACCACATGCTATATCAGAAGCATACAATGAGGATCAATATATTGTACCTAACATCATACAGACACAACAGTTCACTATGGGGCAGCAATTCCCTGCACAAGTAGAACCATTCTCATCTAATCCAAACTTTAGTGAGCAACATGCTGCTTTATCTACAGATTGGACAGCTTGA
- Protein Sequence
- MAYTLSNMNSAAMNSAMSQAMNMFSHYNHQEYVLQELNPLMKQPKPEPIHVQHNPVPPPPPPQNNMPHECQTCHRRFAQKQTLIQHMTTHTGIKAFQCQLCFKNFTQQGSLQRHMAIHNNERPYTCEICHKSFRQKSHLTNHAKSHVDQRMYKCNLCTKSFNRSDHCKRHMLTHSTNRPIYTCFFCNKEFKEKYLMKTHIKKKLCFHEATRTRRRRDSNEPPRERIKREKFLFQCEHCYKNFHRSTKEFSNKYLEKYCKNCCPVSESEKFTFFEEEVYICSVCNGPPFTKLKTYNRHMALHSQDRKFECEICHLRFQKKYLLRYHLNVHNNVKDYQCQLCGLQFETMIKLRDHYCHHVEHAEYLATIMKIYQCHHCSKLFVRRTNCVKHVRSHMNLPRRPKGPRPNNQQNLKEEDENEDLTKPNIGRVVRTASNNRVVDVDEYDHFLSKNNSAGANDEDDDLYMGGDDHSYDEDSTQATSDSKNFNNQQGSGGNYYQQFNNYYCNKSGEGANENQQQMYQQNNQYNQSGNNQNYDGFNNMMVNQNGNQAPPQTGQIPISSLPFANTSNNIQAYGPVEIEHHDIEDLIITSKPRDDDSNPAPFHCYVCKKKYRHKKQLVRHFQVNHTNDYDRVICDICNKEFTHKSSLVEHKLLHLPPKHECPVCQKRFNRKYSLKRHMLLHKGERPFHCTQCSASFNHKKSLEIHLLKHQGILPFECNICNKRYVDKGTLSRHYLVHSGERKFVCHLCDLRFSQKIHLSKHYLTHDEIEKKLILDCHVCGKKFYTKFNFSRHLETHNKKRSVKCDMCDKTFKFENGFQRHLEKGKCKGKTATMKRSGSRKQRRKKKVQVTSDEETSEDSMIVRKRRKQKKMKKKRRKKRKHVTSSEEEEEEDYDEEEEGEGEELPLEIKAEAEENNEVEEEERDVKNVAHINPDYSENFDSEVEELSSNKRLKVKSEMSTGAPFSHAQFSEAPAPHAISEAYNEDQYIVPNIIQTQQFTMGQQFPAQVEPFSSNPNFSEQHAALSTDWTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -