Basic Information

Insect: Diaphorina citri
Gene Symbol: SCRT1
Assembly: GCA_000475195.1
Location: CP125331.1:21344717-21351978[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00022 0.019 16.8 0.6 1 23 293 315 293 315 0.95

2 12 0.0012 0.1 14.5 1.4 1 23 324 346 324 346 0.98

3 12 0.0034 0.3 13.0 0.5 1 23 353 375 353 375 0.92

4 12 2.8e-05 0.0024 19.6 2.7 1 23 381 403 381 403 0.98

5 12 3.6e-06 0.00032 22.4 2.1 1 23 410 432 410 432 0.98

6 12 7.4e-06 0.00065 21.4 0.0 1 23 438 460 438 460 0.97

7 12 9.7e-06 0.00086 21.0 0.4 1 23 466 488 466 488 0.98

8 12 6.6e-06 0.00058 21.6 1.1 1 23 494 517 494 517 0.96

9 12 0.00035 0.031 16.1 0.3 1 23 523 546 523 546 0.95

10 12 8.9e-06 0.00078 21.2 2.1 1 23 552 574 552 574 0.99

11 12 3.3e-05 0.0029 19.4 0.3 1 23 580 602 580 602 0.97

12 12 0.0096 0.84 11.6 0.0 1 21 608 628 608 632 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00022	0.019	16.8	0.6	1	23	293	315	293	315	0.95
2	12	0.0012	0.1	14.5	1.4	1	23	324	346	324	346	0.98
3	12	0.0034	0.3	13.0	0.5	1	23	353	375	353	375	0.92
4	12	2.8e-05	0.0024	19.6	2.7	1	23	381	403	381	403	0.98
5	12	3.6e-06	0.00032	22.4	2.1	1	23	410	432	410	432	0.98
6	12	7.4e-06	0.00065	21.4	0.0	1	23	438	460	438	460	0.97
7	12	9.7e-06	0.00086	21.0	0.4	1	23	466	488	466	488	0.98
8	12	6.6e-06	0.00058	21.6	1.1	1	23	494	517	494	517	0.96
9	12	0.00035	0.031	16.1	0.3	1	23	523	546	523	546	0.95
10	12	8.9e-06	0.00078	21.2	2.1	1	23	552	574	552	574	0.99
11	12	3.3e-05	0.0029	19.4	0.3	1	23	580	602	580	602	0.97
12	12	0.0096	0.84	11.6	0.0	1	21	608	628	608	632	0.92

Sequence Information

Coding Sequence: atggctaaaaaaaaatcaaaaacttgcCTGGTGTGTGATGGAAGCACTCAATCCCTCAGaaatacattttccattttcattcaaCCAGTCTCTACATCagataaaaaaattgttgaaatctTGTCCATGGTACTCAATGCAGACTTGAAGGAAAACAGCGTCCATTCTGTAGTCATATGTAAGAAGTGTTACAAAGTGTGTAATGACATTGATGAAATTCAGGAAAGACTAGAGGAGTTGAAAAAAGATATTGTTGCATCCTATGAGAAAACTTTAAGGAAACAAAATGAATGTATCTTGGAGTTTGATGAAGGAGATGAGGATGCTCTCAAATCTAAAGATGACAATGAAATATTTGAACCTAAAAAACCAGTTGTGAGCAAAAAGAAAGCCAAGGCAAGCACCCAGCCCACACCAGCCAAACCTGTGTCACCAGTCAAAACACAGTCTAGAACTGTAGTCACAGTGAAGATGGTGGATCTTAATGACCCTGAAGTGAAACCTCAACTATCTGATGGACTTGAAGGAGAAGATAAAACCACGGACGAGTACATCACAACCAATGAGGTTGACGATGATTCTGATTTTGATCTGGATGACGATGATGATCGGGTAGAAGAAATCATGGAAGCTGATCTGAAGGAAGGGGAGTTTCCTCTCAAACTGGAAGTAAAGAAAGAACAGTTGACGAGTAAGAGAACTAGAGGAAGGCCTAGAAAGAAGCCCAAGGAAGAGGAGATTGAAATAACACCTCAAATGGTAAGTTATCATAAAAGGGAAGACAACACATACAACTGTCTTCTGTGTGAAAGCCTAGAGAACCGCGATGCCAAAGACATCATCAGTCATGTTCGCACTGTGCACGATATTAAGCTTTACATATGTGACATGTGTGGCAAGGAATTCATGAAGAGATCAGAGTTACATATACATCTGGACGAACACATGTCTacgcaagaagaaggagagtttCAATGTGAGGTATGTAATCGGATATTTAACAGCCTACGTCTGTATCGCGTACACAAGAAATTACACTTCCAGCAGCCGAAAAACTACTTCTGTGATCTGTGCGGGAAACGATTTTCATCTCGCTCTATCATGGAAGATCACTTGGTTAGCCACACGGGGGCTCGTCCCTACGAGTGCAAGACGTGTAAGAAGACATTTGTGTCCAAATACACGTACAAGGCACACCTGGTAACGCACACGGATCGAAAAAGGCCATTCTCTTGTGAGAAATGTGACAAGTCGTTCTATACGCAACAGAATTTGGTGCAACACGAGAAAACGCATTCGGGTAGCAAGGATTTCGTGTGTACGGAATGTGGTAAAGCTTTTGGCACGTTGCGAAACTTGGAAGTGCATCTTGCCGTTCATACCGGGAATAGACCGTTCATCTGTCGTGTGTGTGGCAAATCATTCGTGAGAAAGGCAGAGGTGAAGGACCATGAGAGAACCCACACCGGGGAGAAACCATACCAGTGCGAGTTCTGCGGGGCTCAGTTCAGTCAACGCAGTAATCTCCAGTCACACAAGCGCGCTACTCACTTCAACGACAAGCGATATCCCTGTACGTCCTGTCCTAAGGCGTTCAAACGCAGACGACTGCTAGACTATCATATAAAAGCCGCACATACCGGAGAACGCCCGTACCAGTGTGATATATGTAACGCCACCTTCATTTATCCCGAACATTTCAAGAAGCACAGGCGGATACACACCGGAGAGAAACCCTATGTTTGCGAGGTGTGCGGCAAAGCATTCAACAGCCGAGATAACAGGAATGCTCATCGTTTCGTACACAGTGACAAGAAACCCTACGAGTGTGTCGTGTGTGGCGCCGGCTTCATGAGAAAACCATTGCTGTATGCTCATATGGCCTATCAGAATCACGAGACGGAAACCATTGTGATAAATCAACCCCAGCTCTCGGCTCAGGGTGAACTGGAGAGTTTCCCTGTGAGTGATAGCGAAGACAATGTTAAAATGACCCTGGTACAAGATGAAGACGGCAATACTAAGCTGGTGCCGCTGGAATTCAGTACTACCAATGAAGATGAGAGTCAGGATTCCAATCTCAGTGTTGAACACCTTATTATTAATGATAATGGACAGGTCGTAGAGCTCAAATCGGAATTGAACGTGGATGCTGCGGACATTCGGGAAATCTCCGAGTTGGGAAATTCAAACGATGGCGTTGTCACGCTAGAAGACGTCAATATGGTTCAAGATTCCACCATCTTGGAAACGGACGACGGGCCTGTGCATTTGCTACAGATCCGACTGCCCGATGAGAAAGGAGAACTGAGAGAGACGTGGGTTAACATAATCCCCTCGGAGTAA
Protein Sequence: MAKKKSKTCLVCDGSTQSLRNTFSIFIQPVSTSDKKIVEILSMVLNADLKENSVHSVVICKKCYKVCNDIDEIQERLEELKKDIVASYEKTLRKQNECILEFDEGDEDALKSKDDNEIFEPKKPVVSKKKAKASTQPTPAKPVSPVKTQSRTVVTVKMVDLNDPEVKPQLSDGLEGEDKTTDEYITTNEVDDDSDFDLDDDDDRVEEIMEADLKEGEFPLKLEVKKEQLTSKRTRGRPRKKPKEEEIEITPQMVSYHKREDNTYNCLLCESLENRDAKDIISHVRTVHDIKLYICDMCGKEFMKRSELHIHLDEHMSTQEEGEFQCEVCNRIFNSLRLYRVHKKLHFQQPKNYFCDLCGKRFSSRSIMEDHLVSHTGARPYECKTCKKTFVSKYTYKAHLVTHTDRKRPFSCEKCDKSFYTQQNLVQHEKTHSGSKDFVCTECGKAFGTLRNLEVHLAVHTGNRPFICRVCGKSFVRKAEVKDHERTHTGEKPYQCEFCGAQFSQRSNLQSHKRATHFNDKRYPCTSCPKAFKRRRLLDYHIKAAHTGERPYQCDICNATFIYPEHFKKHRRIHTGEKPYVCEVCGKAFNSRDNRNAHRFVHSDKKPYECVVCGAGFMRKPLLYAHMAYQNHETETIVINQPQLSAQGELESFPVSDSEDNVKMTLVQDEDGNTKLVPLEFSTTNEDESQDSNLSVEHLIINDNGQVVELKSELNVDAADIREISELGNSNDGVVTLEDVNMVQDSTILETDDGPVHLLQIRLPDEKGELRETWVNIIPSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00443110;
90% Identity: iTF_00443110;
80% Identity: -