Basic Information

Insect: Diaphorina citri
Gene Symbol: -
Assembly: GCA_000475195.1
Location: CP125330.1:8723137-8735298[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00019 0.016 17.0 2.3 1 23 170 192 170 192 0.98

2 15 0.00013 0.012 17.5 4.8 1 23 199 221 199 221 0.98

3 15 0.00046 0.041 15.7 0.2 1 23 319 341 319 341 0.98

4 15 2.6e-05 0.0023 19.7 0.2 1 23 347 370 347 370 0.96

5 15 2e-05 0.0018 20.0 2.5 1 23 405 427 405 427 0.98

6 15 0.00045 0.039 15.8 0.2 2 23 445 466 444 466 0.97

7 15 5.4 4.7e+02 3.0 0.3 3 23 494 515 493 515 0.90

8 15 0.046 4.1 9.5 0.0 3 19 524 540 523 540 0.96

9 15 1.6e-06 0.00014 23.5 0.9 1 23 562 585 562 585 0.95

10 15 0.17 15 7.7 0.3 1 23 607 629 607 629 0.95

11 15 2.3e-06 0.0002 23.0 2.3 1 23 640 662 640 662 0.98

12 15 0.00034 0.03 16.2 0.5 1 23 668 690 668 690 0.98

13 15 2.3e-05 0.002 19.9 0.3 1 23 696 718 696 719 0.96

14 15 0.016 1.4 10.9 2.0 1 23 730 752 730 752 0.95

15 15 6e-05 0.0053 18.5 0.3 1 23 1077 1099 1077 1099 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00019	0.016	17.0	2.3	1	23	170	192	170	192	0.98
2	15	0.00013	0.012	17.5	4.8	1	23	199	221	199	221	0.98
3	15	0.00046	0.041	15.7	0.2	1	23	319	341	319	341	0.98
4	15	2.6e-05	0.0023	19.7	0.2	1	23	347	370	347	370	0.96
5	15	2e-05	0.0018	20.0	2.5	1	23	405	427	405	427	0.98
6	15	0.00045	0.039	15.8	0.2	2	23	445	466	444	466	0.97
7	15	5.4	4.7e+02	3.0	0.3	3	23	494	515	493	515	0.90
8	15	0.046	4.1	9.5	0.0	3	19	524	540	523	540	0.96
9	15	1.6e-06	0.00014	23.5	0.9	1	23	562	585	562	585	0.95
10	15	0.17	15	7.7	0.3	1	23	607	629	607	629	0.95
11	15	2.3e-06	0.0002	23.0	2.3	1	23	640	662	640	662	0.98
12	15	0.00034	0.03	16.2	0.5	1	23	668	690	668	690	0.98
13	15	2.3e-05	0.002	19.9	0.3	1	23	696	718	696	719	0.96
14	15	0.016	1.4	10.9	2.0	1	23	730	752	730	752	0.95
15	15	6e-05	0.0053	18.5	0.3	1	23	1077	1099	1077	1099	0.98

Sequence Information

Coding Sequence: ATGTCTGATTTAGATTCTTCATACgttattcgctatgaaaacccAGACGGAGATCCTGTGTATGTGGTGGAAAATGCCGAAGGACTCATTGAGTTTTCCAATCTAACCGATGGTCTGGATTGTCTTGCGGCAATCTCCTCGTTGAGTAATGGTGAGCTGGTGTCCATAGATGACCCTGTACAGCCTGATGATGGAGACACAATCATCACCGGAGATTTACAACCAGAGCCCGTCGTCACAACAGATGTCGAGACCGAGTTTGTCGTTGAAGATCCACTTGCTGGAAGTGGTGGGGAATATGTGGAAATCCAGGAGGTCGTGGAGGAAGAGGTGATTGCCGAGGGAAGTCATGATCCAAATGAGACAACTGATCTGAATGATCAGGACCTCATTCAGCAGATCATGTCGTACAAGACCTCTCTCCCTGGCTCGATAGACTCCGCAATACCATCTCTACCCAACCTGCTCGAGAACGCTCATCCCCTGGACCTACCAACTAGTCCAGTCTACCCATGTGACTCCTGTAATGAGAAGTTTACGAAGAAGCTCCATCTGATGAATCACATGATTACCCATCAGTCGGAACATCTACCTCATACATGTTTCAAATGCAGCATTTCGTTCAGTCGCCGTTCCGAGTTCAACACGCACATGAAGATTCACTCGATGGAAAACAACGACCAGTTGAATCTGCTTCAAGATTTGGATGAAGAGTTGGGCAGGTTTTCTCGTCGCAAGAGAAATAATTCGACGCGCAGCAACACATCTACTTCCTCAACTGGTAGGAGACGGTACACGTATTCCaactcctcctccacctcctccagAAAGCGGAAACACTCCACCCGTCTTGATGATACGTTTGAGCTGGACATGCTCATTAAATCTGCCGAGAAAAGCTCCCGATCTCTTGAAAATAGACTGAAATGGCCGGTAACGAGTGACTCGCGGCCATACGTATGTCAAACCTGTGGCCTCTCCTTCGGCCGGGAAAAGGCCCTCCTCAATCACAACCGAATTCATATAGGTGATAACTCGTACGAATGTACGATCTGCGGAGAGTCGTTCTATTCAGTCTCGGCGCTGCGGGATCACACGAGGGCCAAACATTTCACCTCGTTTCTCACTTCGCCGCGAGGGGACATCATTCGAGCGGATAAGTTTGAGGGGGCCGGGGGAGACCTGCTGCCCCCGCACGAACAATATGGCGACTTTCCGTGTCATATTTGCGGACAGATGTACTATCGGCTTGACCAGTTCCAGAGACACGAGAGAACCCATCAACCAGTGGTGGAGGATACGGACAGCAGAGACACAGACGAGTGCCCCCAGGTGTGCAAACAGTGCGGGATGTATTTCGAGAACGAGGATGAACTACGAGATCATATCAAACTGCATCAGCCCCCCTCGGAACCCAGCGTACCGGTCGCCACTACAAGCGCTACTTTGGATAAGACCGCCACTGATTATATCAACCGCTGCATCGTGTGTAACGAGCATTTCGCATCCACGGAGCTCGCGGTCACCCACATGAAAGAAGTTCACGGGGATGAACTTTTGGACAACATTTGTACTATCTGTGGACAGCAGTTCTCCGATGAGGCATTGCTTCTATCGCACGATTGCACCGAGGTGTCTCCACCGCGCTCCCCGGCGAAAAGTACGAGAAAGAAGGCACTCCAGTACACTTGTGACGATTGCGGGAAGGTGTTTACGTCGCGGCCCAAACtgaaaagGCACACCATGGCGTTTCACAAGCCCACGGCGTCGGCCGCTCGGCCCGCGGCCTCTAAAGGTCCTCCCGCCTCCCCCGCCTCACACATGTGCGAAGACTGTGGTGAAGAGTATTGGGACCGGCAAAGTCTCCTGGTACATAAGGCCAGACACGATGTTATACGAACGGAGAGAGGTCGGATATTTCCGTGTCATGACTGTGGGAAGACGTTCAATTCCAGATCCTCACAACAGATTCACCAAAGAATACACACGGGGGAGCGGCCTTATTCGTGTCGTTACTGTTACAAAGCTTTCGCTGACGGCGGCACATTGAGAAAGCACGAACGAGTACATACCGGAGAAAAACCCTATGTGTGTCCTATATGTAGCAAAGCTTTCAATCAGCGGGTTGTTCTACGGGAGCACATCCGCGCTCACCACTCGGGGCCGGAAAGCAAGGGCGCTACCACGTTCGAGTGTAAGGTGTGTGGGTGTATGTTGTCCTCTTCGCCAGAGCTATGTCAACATTTGGTTCAACATTCGGACGAAAATACCGCCAAGAATAGAGTCGTACCGACCGCCCCTCGCAAGTACAAGAGGCGACGAAAGTTGTTGCCGCACGAAGGTGACGGGTTCCCAGACACGGACGACGATGAAGAGGCCTCCGCCTCCAAATCTGCCCCCGCCGACGGCACTGACACCAAACCTTCGGCCTCCCTTCTTCAGCCTCCCCGCAAACCCACGCCGGAATACGACAGGGAGTTTCTGGAGTGGGAAATGAAAGTGGGAATCAACAGTATGGATAAGGCGGCGAGTCCTGTGAAAACGAAAACGAAAGGTGCCGCGACGCGTAAGCAGCCCAGTCGCCGGTCGCACCGCAGCTACGCCTCTAAATATTGGGTGACTGCGCCGCCCCCTGACCGAGACCCGAGTCCTCGCAAGTCAACGCCGGCCAAATCCCATGCAGCTGCGGCCAAAACCAGTGCAACTGCGGCCGATGGTCTTATTTCGCTTAGCTCTCTGGCTCAGGTGATAGCAGAACGGGAAGGCTGTCCATCTGATTCGGACGAAACCTCAGCCCGTACCCATCGCAAACATGATGAGGACCGTTTGCATGAAGACATCAAGGCGTTATCCGCTGAACTGATAGCGACTGATACCACGCCACCTAGCGGCAGACCCAAGCGACAATACAGACGCAAGAATCAGCATAGTAAAATCAACGTGGACCTGAACCATGTGATGGaccAAATACCACCAGATCCTCTTGCCAAGCTGGAACCCGAGGAAACTCCGGAATCAATAATGGACCGAATCAAGCAGGAATTGATCGAGTCAAGTCAAGATGGGCAGGAGTGCATAGCGGAATCCTTTATCAATGTGGTGCGCTCTGGTGTTGAGAGTGGGGAACTGACGGAAGAGGTGGAAGCCCGGACGGAAACCATTGAGACGTGGACTCACTTGGAATCCGAAGGCGGTCAAGATCCGGATGGTGTGGGATTCGCGAGGTTTCATACTTGTGATATGTGTAGCGAAGTGTTTGCAGACAAGGAAGAACTCATGCTTCATATCAAAATACATCTGTGA
Protein Sequence: MSDLDSSYVIRYENPDGDPVYVVENAEGLIEFSNLTDGLDCLAAISSLSNGELVSIDDPVQPDDGDTIITGDLQPEPVVTTDVETEFVVEDPLAGSGGEYVEIQEVVEEEVIAEGSHDPNETTDLNDQDLIQQIMSYKTSLPGSIDSAIPSLPNLLENAHPLDLPTSPVYPCDSCNEKFTKKLHLMNHMITHQSEHLPHTCFKCSISFSRRSEFNTHMKIHSMENNDQLNLLQDLDEELGRFSRRKRNNSTRSNTSTSSTGRRRYTYSNSSSTSSRKRKHSTRLDDTFELDMLIKSAEKSSRSLENRLKWPVTSDSRPYVCQTCGLSFGREKALLNHNRIHIGDNSYECTICGESFYSVSALRDHTRAKHFTSFLTSPRGDIIRADKFEGAGGDLLPPHEQYGDFPCHICGQMYYRLDQFQRHERTHQPVVEDTDSRDTDECPQVCKQCGMYFENEDELRDHIKLHQPPSEPSVPVATTSATLDKTATDYINRCIVCNEHFASTELAVTHMKEVHGDELLDNICTICGQQFSDEALLLSHDCTEVSPPRSPAKSTRKKALQYTCDDCGKVFTSRPKLKRHTMAFHKPTASAARPAASKGPPASPASHMCEDCGEEYWDRQSLLVHKARHDVIRTERGRIFPCHDCGKTFNSRSSQQIHQRIHTGERPYSCRYCYKAFADGGTLRKHERVHTGEKPYVCPICSKAFNQRVVLREHIRAHHSGPESKGATTFECKVCGCMLSSSPELCQHLVQHSDENTAKNRVVPTAPRKYKRRRKLLPHEGDGFPDTDDDEEASASKSAPADGTDTKPSASLLQPPRKPTPEYDREFLEWEMKVGINSMDKAASPVKTKTKGAATRKQPSRRSHRSYASKYWVTAPPPDRDPSPRKSTPAKSHAAAAKTSATAADGLISLSSLAQVIAEREGCPSDSDETSARTHRKHDEDRLHEDIKALSAELIATDTTPPSGRPKRQYRRKNQHSKINVDLNHVMDQIPPDPLAKLEPEETPESIMDRIKQELIESSQDGQECIAESFINVVRSGVESGELTEEVEARTETIETWTHLESEGGQDPDGVGFARFHTCDMCSEVFADKEELMLHIKIHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -