Dcit039818.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125333.1:8089375-8092389[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.054 4.7 9.3 0.3 1 23 6 29 6 29 0.98 2 24 4.3e-06 0.00038 22.2 1.7 1 23 95 118 95 118 0.94 3 24 6.1e-05 0.0053 18.5 1.8 1 23 124 146 124 146 0.99 4 24 1.7e-05 0.0015 20.2 2.7 1 23 152 174 152 174 0.98 5 24 0.37 32 6.6 0.1 2 23 180 201 179 201 0.97 6 24 0.36 32 6.7 2.6 1 23 206 229 206 229 0.96 7 24 0.025 2.2 10.3 2.8 1 23 235 257 235 257 0.97 8 24 0.023 2 10.4 1.4 1 23 261 284 261 284 0.94 9 24 0.19 17 7.5 3.5 1 23 290 312 290 312 0.93 10 24 0.0086 0.76 11.8 2.6 1 21 316 336 316 337 0.93 11 24 0.0058 0.51 12.3 1.2 1 21 340 360 340 361 0.95 12 24 0.00051 0.045 15.6 1.4 2 23 377 398 376 398 0.96 13 24 0.0027 0.24 13.3 7.8 1 23 405 427 405 427 0.98 14 24 0.00049 0.043 15.7 3.7 1 23 433 455 433 455 0.98 15 24 0.00032 0.028 16.3 0.2 1 23 461 483 461 483 0.97 16 24 0.00019 0.017 17.0 5.8 1 23 488 510 488 510 0.96 17 24 0.00021 0.019 16.8 4.6 1 23 516 538 516 538 0.97 18 24 0.0035 0.31 13.0 5.9 1 23 544 566 544 566 0.97 19 24 0.0004 0.035 15.9 4.8 1 23 572 594 572 594 0.97 20 24 0.0004 0.035 15.9 0.3 1 23 601 624 601 624 0.97 21 24 4.3 3.8e+02 3.3 0.3 1 23 627 650 627 650 0.94 22 24 0.0091 0.8 11.7 5.4 1 23 666 689 666 689 0.96 23 24 0.04 3.5 9.7 9.6 1 23 698 720 698 721 0.94 24 24 0.017 1.5 10.8 1.8 1 23 964 987 964 987 0.95
Sequence Information
- Coding Sequence
- ATGACTCTTAAAACATACACCTGTGACTTTTGCTCGGCTGCATTTGCTCTAAAACACTCAATAGCAGACCATATTCAAACAGAGCACATGGGAAATCCAAAACACCAGGACACTAAGCAATACCCAGCATTTAGAAATGGATCATTTTACATCAGAGCAGACATTGAACAACCTAAAGTCAAAGTTGAACATGAAACCATCATGAGTTATGCAAGGCGGCAGGTAGAGTATGAACAAGAGCAACAGATACCAGCTCAGGGGAAATCAATTCAAGAACGAAAATTTAAGTGTGAAATGTGCCCAAAATCATTTGATCACAAATCAAATATTCGAAGACATATGGCAGCAACACATGATCTTCAGAAGAAATATAAATGTAAGTTATGTGCACGTATGTATCGTTACAAATGGAATCTCAAAGCTCATCTGAAGATGCACAAGGGTCCCAAAATCTTCACTTGTGCTCAATGTGATAAAGCTTTTTCTCTTAAATCAAATCTATCAAAACATGTTAGACACCATATGGAGAATGTGAAGCAGTGTAAGATTTGTCTGGAGATATTTGAAGATGATGAAGTACTGGAAGAGCATGTCAAATCACACCAGAACAGAAGGTTCAAGTGTCCTTGCTGTGAACGAATATTCACGTCTGAGACTAgaatgagaaatcacattgacatGAAGCATGCAGATGAGAATCTTTTTAAGTGTAAGAAATGTCTCAAGGTATTCTCAGATGAAATTAAGTTCCATCTCCATGGTAGAGCTCATGCAAAGTTCTACCGATGTAGTGAGTGTGAGAAGCGGTTTGCAACAGAGGATATTATGAGACAACATTTCCGTAACTATCATAATAAAGAAGATGCCTATGTGTGCAACTATTGCTATGATTCGTTTGAGACCAAGTCTACTCTTGTAGATCACTTCTTTCATCATGGTAACCCTTATATGTGTAATCATTGTTTCCTTATGTTTCCTGATGAGAAAAACTTGCGTAATCACGAGTGTACCAGTTGTTTTACATGTCCTTTCTGtcagagaaaatataaaatcgAGAAACATTTGGAGAAACACATTGAGTCATGCATACAACTTAACCCCACTACCACAGTACTCAAGACTCTACAGAAATGTCGCTACTGTCAGCGTATGTTTAGGAATGAAGACAAGTTGACAGCTCATGAATTGAGCCATACCATGGAGAAGACATTGTACAAGTGTTTATATTGCCACAAGGTATTCAAGAAGTCAACATCCTTTGATAAACACATGGAGCATCATAATCGTAATGTCCTTCACAAGTGCCATCTCTGTACCAAAGCATATCCTTCAGAGAAAAATCTAGATAGACATCTCTTAACTCATAATGTGAGAAGATCATTTCGTTGTAAATCATGTGGCAGAAGATTTGAAAGTGAAGAGTTATTGATTGTACATCAAGTGATCCATGAGAGAAAGTTTCACAAGTGTACACAATGTGAGGAGAGTTTCAAGAATAAGAAACATTTGAAGCAACACTTGCTAGCACATGAGAAGGTAAAGGTATTTCACTGTCCCAAGTGTCCCAAACTATTCAGACATGAGAGTCATCTTCAGAATCATGTTATTGTACATGATGAGAGTGAAGTACACAAGTGTCTCTATTGCTTCAAGGTATTTGTACACAAGGCACATCTAGACAAGCATCTTATCCTACATGAAACCAGTGAGATGCATAACTGTGACTTCTGCCACCTTACCTTTACTACTGATAATGATCTAATAAGACACATGCGCTCTCATGAGGAATATCACACAAAACACACGTGTGACATTTGTGGTGAAAAGTTTATCAATGATCTCAAGCTGAAAGCTCACATCAAAATTATCCACAACTTGTTTACTTGTATTCACTGTGGAGATACCCTAAATAATGCCAAGGACTATGCATCTCACCTACTTATCATACACAATATAGAAAGTTCTCAACAAGTAGAGAAGAATCTGAATAACATGTACAAGTGTGATCATTGCATGAAGATATTTTCTACAGAAATACATCTGAAGAATCATAAGAAATATATCCATGACAAAGTACATCTTGTCAAATCTCACTCGTGTCATTTCTGTTCCAAAACATTTGCTTTCCATAGTTTGCTCACGACACACATTGAGTATCATCATAGTCAGAATAACATAGAGTCAGAGAGTAACCAGTCTTCAGGGTTTATGTACAATGATGAGACGAGCAGCTACTCACACATCAAACAAGAGGATGATAGTTGTGATACATACATGGATGACACAACTGAAAATAGTagtaatacctatttgaaacaagAAACACCAGATAACGAGGACATTGACACTACTCCTGTGCCAGAATCCAGTGATATATTGGCTATTAACTATGAGGACAAAGTAAAAGATGAACCTGTAAGTACAAGTAATGCCATTGTGCCCATAGACTATGTGAAAGGAGAAGTGCTAGATATAAGTGAAGATGCTATCAGTACAAGTAATGCTATGATACCTATCCGTTATATCAAGGAAGAAATAATTGACGATATGAGTGATGAAGTGGATTATGCAGAACATCAGAACGGTGATCTAACTGGCAACTACTTTAACGAAGAAACCACTGAGAATTACatagaggacgaggaggagttACAAGAAGAAGATATTACCAATCATCTACACGAAATACAAAACGAAGACACACAGAATCATCTGatggaaataaaacaatatcaTCTGCAAGTAGACAATAATGACATTCTAGTCAATACATTCGAAAATACTATCAAGAAAGAAGGGGTAGATATGGAAGATAATGTGTTCATTAAAACTGAAGTACCACGAGAAAACCAAGAGAATATTCTCAATCATGTAGATCAAAGCGAATCTCATGCCTGTAATCAATGTAATATGGCCTATTGTAAAATGAAAGATCTCATTGCCCATATGGACAAAGCACACAACTGTAGCATTGATAATCAAATCATAGAATTGAGTAGCCCTGTGGAAACGTGA
- Protein Sequence
- MTLKTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYKCDHCMKIFSTEIHLKNHKKYIHDKVHLVKSHSCHFCSKTFAFHSLLTTHIEYHHSQNNIESESNQSSGFMYNDETSSYSHIKQEDDSCDTYMDDTTENSSNTYLKQETPDNEDIDTTPVPESSDILAINYEDKVKDEPVSTSNAIVPIDYVKGEVLDISEDAISTSNAMIPIRYIKEEIIDDMSDEVDYAEHQNGDLTGNYFNEETTENYIEDEEELQEEDITNHLHEIQNEDTQNHLMEIKQYHLQVDNNDILVNTFENTIKKEGVDMEDNVFIKTEVPRENQENILNHVDQSESHACNQCNMAYCKMKDLIAHMDKAHNCSIDNQIIELSSPVET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443105;
- 90% Identity
- iTF_00443105;
- 80% Identity
- -