Basic Information

Insect: Diaphorina citri
Gene Symbol: -
Assembly: GCA_000475195.1
Location: CP125330.1:18988894-18993161[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00022 0.02 16.7 1.1 1 23 51 73 51 73 0.98

2 18 5.9e-07 5.2e-05 24.9 0.7 1 23 79 101 79 101 0.96

3 18 5.9e-06 0.00052 21.7 3.8 1 23 108 130 108 130 0.98

4 18 0.00011 0.0098 17.7 0.2 1 23 137 159 137 159 0.98

5 18 1.7e-05 0.0015 20.3 0.5 1 23 220 242 220 242 0.98

6 18 0.023 2 10.4 3.5 1 23 252 274 252 274 0.91

7 18 0.00096 0.084 14.8 1.3 1 23 318 340 318 340 0.97

8 18 0.46 41 6.3 0.3 3 23 347 368 346 368 0.90

9 18 0.002 0.18 13.7 5.2 1 23 374 396 374 396 0.96

10 18 0.025 2.2 10.3 0.9 1 23 409 431 409 431 0.99

11 18 0.0021 0.18 13.7 2.3 1 23 933 956 933 956 0.95

12 18 4.6e-05 0.0041 18.9 0.1 2 23 963 985 962 985 0.95

13 18 5.2e-06 0.00046 21.9 0.6 1 23 990 1012 990 1012 0.99

14 18 0.0004 0.035 15.9 0.9 1 23 1018 1040 1018 1040 0.96

15 18 0.049 4.3 9.4 2.0 1 21 1049 1069 1049 1071 0.87

16 18 7e-05 0.0062 18.3 3.6 1 23 1077 1099 1077 1099 0.97

17 18 8.4e-06 0.00074 21.2 0.2 1 23 1106 1128 1106 1128 0.98

18 18 0.02 1.8 10.6 1.0 1 21 1135 1155 1135 1156 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00022	0.02	16.7	1.1	1	23	51	73	51	73	0.98
2	18	5.9e-07	5.2e-05	24.9	0.7	1	23	79	101	79	101	0.96
3	18	5.9e-06	0.00052	21.7	3.8	1	23	108	130	108	130	0.98
4	18	0.00011	0.0098	17.7	0.2	1	23	137	159	137	159	0.98
5	18	1.7e-05	0.0015	20.3	0.5	1	23	220	242	220	242	0.98
6	18	0.023	2	10.4	3.5	1	23	252	274	252	274	0.91
7	18	0.00096	0.084	14.8	1.3	1	23	318	340	318	340	0.97
8	18	0.46	41	6.3	0.3	3	23	347	368	346	368	0.90
9	18	0.002	0.18	13.7	5.2	1	23	374	396	374	396	0.96
10	18	0.025	2.2	10.3	0.9	1	23	409	431	409	431	0.99
11	18	0.0021	0.18	13.7	2.3	1	23	933	956	933	956	0.95
12	18	4.6e-05	0.0041	18.9	0.1	2	23	963	985	962	985	0.95
13	18	5.2e-06	0.00046	21.9	0.6	1	23	990	1012	990	1012	0.99
14	18	0.0004	0.035	15.9	0.9	1	23	1018	1040	1018	1040	0.96
15	18	0.049	4.3	9.4	2.0	1	21	1049	1069	1049	1071	0.87
16	18	7e-05	0.0062	18.3	3.6	1	23	1077	1099	1077	1099	0.97
17	18	8.4e-06	0.00074	21.2	0.2	1	23	1106	1128	1106	1128	0.98
18	18	0.02	1.8	10.6	1.0	1	21	1135	1155	1135	1156	0.95

Sequence Information

Coding Sequence: ATGCAAAAGAACTCTGGTGGTGAAGTCTTTGAAGTTGTCTACGTAAACTCATTGGAAGATGAAAATAGCGGAAGCAATGTGAACTCTCAGACAAGTTTTGCGAGGAAGCATGAACGACATTCGTCGACAAAAGTCGACAAGGAGCGACCTTTCGAGTGTGAGATCTGTTTCAACAGATTCAGCCAGAAGCAAACGTTAAAGCAGCACATCCTAATACACACGGGGCAGAGACCATTTGAGTGCAACATCTGTGGTAAGACATTCACCCAGCAGGGCGCCCTTCACCGGCATTTAGCGCTTCATACGGAGGAAGACAAGCCGTTTACTTGTCACCTCTGTCCGCTTAGTTTTCGCCAACAGACGAACTTGAAGCGACATTTGAAACTGCATGAAGGAACCGCGAAAGTTTTCGAGTGTGAGATATGCGCTCGGCGCTTTGCGCGAAAGGAAGGTCTGGTCCGACATGGAAAAACGCATGAGCGCCAGCGGAAGAGATTCGCCCAGCAGGGTTCGCTGCATCGTTTAGCGCTTCATACGGAGAGTGATAAGCCGTTCACTCTGCCTGAGCAAGAAAGCGGACAAGCAGCGGACATAGGTGACAACCTTCCGCTTAGTTTGGGGCAACATACGAATCCGCACGAAGGGAACGCCAAAGTTTTCGAGTGTGACATATGCACGCGTCGCTTTGCCCGTAAGGAAGGTCTGGTCCGACATGAGAAAACGCATGCGCGCCAGTTGGAGGGTAACGTGCGGCATTTCTGTTCACATTGCAACCAATCGTTTGCGAACGAACTGAGCCTGAAGAAACACGAGGATGGTCATTATAGTTCTCGAATTGAAGACATGAACGAAATGTCAAACCAGATCTCGTCCACGGGGAAAGTGttaaaagataaggaaaatacTGAAAGTAGAGCTGGGTCGTCTTCAAAGAAAATTCTCTTCCTAACATTCGCCTGTCCGATGTGTAACTTCACGTGTTCTAAGTCGGCAGACTTCGAGGTCCATCAACTTACACATGTCCGGGAAGACAACATCTGCGTCTTCTGCAATTTAGAATTCTCCAGCCAAGACCTGGTCCTGGCCCACATTGACGATTGCCACATGCTGGGCCCGGTCCACTGCTGCAAACTGTGCCCAGAAACATTCAGCCAAGAGTCGCACCTCAGCGACCACTACCTCGTGCATCGTCGGGACGTGGATTTGAGCGACTATGTGCGCGTCTATCAGTGCTACCTCTGTGACCAACTGTTCGCGCGACGCTCTCGAATTGTCAGTCACGTGAGGAAGCACGAAAAACGAGGTGATGTAAGAAGCCAAGGCGGATACTCTAAATCTAAACACAAAAGTCAAGGTAGCAAAAGAAACCTTCGCAGAGGTACGAAACCTGGTAGACAAGATGACAACCTAAACCAAAGTACAAAGCATGGAACTTCAGAGTATGGAAATGACCGAGGAAGTTTTATAGGTGAAGAACCAATAGATTCGTTCATAACCACTTTGCTCAAACAACAGGACATTGGTCAAAATAACGCTTACTTAGAAGCTCAGGATATTCAAAATGACGCTTATGTAGAAACTGAGAACATTGCTCAAGATAACTATGGTGAGATGCATGACAAACTAGAGTACACGCCCAACGTAACGCCTGTAGATGAAATGAAATTCGATGGAGTATTAGTAAAAGCCGATACCGTAATTAGAAAGCCTTTTGATCTCGAATTCACCAGAAAATCCACAACTTTATCAGCACAAACGGAAGAAAATCTTGTGCCTTCTGTTATCTCCAAAAGTATTAAAATTGAACAAGGTAGTGAAGATAAATTAGTCACGCTTCATACTAATGATGGAGACCAAGAACTATTAGACAAGAGTCTTTACAAATCCCATGAAAATGTGGTTCAGGATCCCATCGATATTCTGTACGAAAACGACCAACCTGTCAGTATATTCTACAAACAGGACGATTATACTGTACAACTTATCAATCCTGAAGGGAACTTGGACGCTCAGGAAAATCCTGACGATCCTGAGGACATTGAAATAAAGCAAGAAGAATTCCAGGATCAAGTAGAAGGATTTGAAAATGAAGTTAGCcaagaagatgaaaattatgaaagtgAAGTATACCAAGACAATGAAGAAATGACTACAAATGAAGTATATCAAGGTTATGGAGAAAACTATAAAAAAGAATTGCTCCAAGATCATGTAGAAGAGCATCCAGAAGAAATCTATGATAATGAAGAGCACCAAAAAGAAAgctatgaaaatgaaacatacCAAAAAGAAgtctatgaaaatgaaacatacCAAGAACATGAACAACAAATTTATCAAGATCAAGAAAACACTGAAGTAGAAGACGATGACACAATGTTCCTGGAAGAACGAACAACGAGTGCTCCGAACTCCCCAAGAGATTTGGATGACGACTACGACATTGACGAGTTAGTTGAAGCGAATCTCAACACGGATGTTGAACAGAGTAGCAACAAAGAGATAAGCAAAGATATCGATGAGGCTCTATTAGGCAAAGGTCTCAATGAGGCTCACAAGGCAGATGATATTTCATGGGATTCTGCAGCAATCAAAGGGTCAGACAGTTCGTTGAACCCTCAAAGCAACACTGACGCGGTCTCTAATGCTATGATCACGGACGCTTTGCTGTCAAATTTTAAAGGCAAAGGAGTTATCAAAGCGAAACAAAAGGTCGAATACGTCAAAGTCAGTTTCGATGCAGACGGTCTCTTCTGCGAGGATGACGAAAGTTCCCAGGATAAAGGCGTGTCTCCCTACGCGTGTTACGTGTGCAAGAAGTCGTACGCCAACAAGAACAGCATGCGGAGACACTTCCGGCTCACGCATACGAATTATGAGAAGCTGCCGTGCGACCAGTGTCCGAAAATATTCCAATCCAAGGATGCGCTCCGCAAGCACATCCGTGCGTTACACACGCCGCACCGCTTCAAGTGTGGCGTGTGTCAGCGAACGTTCAACCGCAAGGATGCGTTGGCGAGCCACGCCCGCACTCACAGCGCCGAGAGACCGTTCGCGTGCGAAACGTGCGGTGCGAGTTTCGCGCAGAAACAACACTTGTACGCGCACTCCATGAAGCATCGGCAAGACATACAGAGCAGACCGTTCGTGTGTGACTACTGCGGGAAGCGGTTTCAGGGCAAGGAGATCCTGAAGAGGCACTGTCTCATTCATACCAACGAGCGTAACTTTGCGTGTCACATCTGCAATCGTACGTTCATTCAGAAAAACCACCTTGACAAGCATCTGCTCATTCATAATGAGGACGCAGCCAAGTACCCGTGCGCTATATGCGACAAGATATTCAGTAGGAAGGACACCATGCAGCGACATGCGGAAACGCATGCGAATGGGCGTCGACTGTACCATTGCGCTCATTGCGACAAGGGACTGAAGAGTAAGGTGACCCTGGCGTTGCACTTGAAGAGGAAGATTTGTATGAGCAGTCGAAAGtgggcgaagaaggagaaggaattgGGGAGGAATGTATTCTATGAAGgggCTCTTGCCTGGTTCCATAAAACTGATGTTATTTCATTCATGACAAAGGACACGAAAGTTTTCGTTTATTCCATCAAGTTCCTATGCTTTGGGTAG
Protein Sequence: MQKNSGGEVFEVVYVNSLEDENSGSNVNSQTSFARKHERHSSTKVDKERPFECEICFNRFSQKQTLKQHILIHTGQRPFECNICGKTFTQQGALHRHLALHTEEDKPFTCHLCPLSFRQQTNLKRHLKLHEGTAKVFECEICARRFARKEGLVRHGKTHERQRKRFAQQGSLHRLALHTESDKPFTLPEQESGQAADIGDNLPLSLGQHTNPHEGNAKVFECDICTRRFARKEGLVRHEKTHARQLEGNVRHFCSHCNQSFANELSLKKHEDGHYSSRIEDMNEMSNQISSTGKVLKDKENTESRAGSSSKKILFLTFACPMCNFTCSKSADFEVHQLTHVREDNICVFCNLEFSSQDLVLAHIDDCHMLGPVHCCKLCPETFSQESHLSDHYLVHRRDVDLSDYVRVYQCYLCDQLFARRSRIVSHVRKHEKRGDVRSQGGYSKSKHKSQGSKRNLRRGTKPGRQDDNLNQSTKHGTSEYGNDRGSFIGEEPIDSFITTLLKQQDIGQNNAYLEAQDIQNDAYVETENIAQDNYGEMHDKLEYTPNVTPVDEMKFDGVLVKADTVIRKPFDLEFTRKSTTLSAQTEENLVPSVISKSIKIEQGSEDKLVTLHTNDGDQELLDKSLYKSHENVVQDPIDILYENDQPVSIFYKQDDYTVQLINPEGNLDAQENPDDPEDIEIKQEEFQDQVEGFENEVSQEDENYESEVYQDNEEMTTNEVYQGYGENYKKELLQDHVEEHPEEIYDNEEHQKESYENETYQKEVYENETYQEHEQQIYQDQENTEVEDDDTMFLEERTTSAPNSPRDLDDDYDIDELVEANLNTDVEQSSNKEISKDIDEALLGKGLNEAHKADDISWDSAAIKGSDSSLNPQSNTDAVSNAMITDALLSNFKGKGVIKAKQKVEYVKVSFDADGLFCEDDESSQDKGVSPYACYVCKKSYANKNSMRRHFRLTHTNYEKLPCDQCPKIFQSKDALRKHIRALHTPHRFKCGVCQRTFNRKDALASHARTHSAERPFACETCGASFAQKQHLYAHSMKHRQDIQSRPFVCDYCGKRFQGKEILKRHCLIHTNERNFACHICNRTFIQKNHLDKHLLIHNEDAAKYPCAICDKIFSRKDTMQRHAETHANGRRLYHCAHCDKGLKSKVTLALHLKRKICMSSRKWAKKEKELGRNVFYEGALAWFHKTDVISFMTKDTKVFVYSIKFLCFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00443095;
90% Identity: iTF_00443095;
80% Identity: -