Dcit029279.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125330.1:20450127-20452583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00018 0.016 17.0 2.9 1 23 39 61 39 61 0.99 2 20 4.1e-06 0.00036 22.2 1.1 1 23 67 89 67 89 0.98 3 20 0.00045 0.04 15.8 0.4 1 23 95 117 95 117 0.96 4 20 7e-06 0.00062 21.5 1.1 1 23 124 146 124 146 0.98 5 20 6.1 5.4e+02 2.8 0.3 2 12 199 209 198 212 0.89 6 20 0.00024 0.021 16.7 0.7 1 23 250 272 250 272 0.96 7 20 0.0026 0.23 13.4 3.9 1 23 278 300 278 300 0.98 8 20 0.00067 0.059 15.2 3.9 1 23 305 327 305 327 0.95 9 20 0.5 44 6.2 3.2 1 23 343 365 343 365 0.97 10 20 1.9e-05 0.0016 20.1 1.7 1 23 449 472 449 472 0.91 11 20 1e-06 8.9e-05 24.1 0.8 2 23 479 500 479 500 0.97 12 20 0.00065 0.057 15.3 6.2 1 23 505 527 505 527 0.98 13 20 0.0026 0.23 13.4 3.1 1 23 533 556 533 556 0.91 14 20 0.00086 0.076 14.9 3.2 2 23 563 584 563 584 0.96 15 20 8.3e-07 7.3e-05 24.4 3.7 1 23 589 611 589 611 0.98 16 20 2.6e-05 0.0023 19.7 2.1 1 23 617 639 617 639 0.98 17 20 5.6e-05 0.0049 18.6 0.6 1 23 644 666 644 666 0.97 18 20 0.001 0.089 14.7 2.8 1 23 672 694 672 694 0.97 19 20 0.00081 0.071 15.0 0.8 2 23 700 721 699 721 0.97 20 20 0.008 0.71 11.9 9.5 2 23 732 753 731 753 0.96
Sequence Information
- Coding Sequence
- ATGGTAAACATCCATTCTATGATTCCTATGGAGTTACCTCCTACGATGGAGGTGCTTGCACCACCGCCACAGCTCATACCAAACTCAACGTCTAAACCGGTAAAAGATCGACCTTTCCAATGTGAAACCTGTTTCCGTCGGTTCAGCTTAAAGAAAACGCTGCAACAGCACATCCTAACGCACACGGGGGAAAGGCCGTTCCCGTGTCCACTTTGTCCCAAGAGGTTCAGTCGCCAAGACAAGGTCCACCGCCACATGTTGGTGCACACCGGCGAAAAGCCGTTCGCCTGCACCGCGTGCGACAAACGATTTGGTCAGAAGGGCTCCCTCATGTTGCACCTGAAGCTTCACCAAGACGCGCCGAAAGAGTTCAGGTGCAGCGTCTGTTGGAAGGAGTTCACGAGAAAGGTGTACCTGTCCCGCCACTTGGCAACGCACGATGAACGACCCAGACTGAAGTGCGCCTGCTGTGAGAGAGACTTCCTCAATAAGGAGAGTCTTCGACAACACGAGAAGAACCAGGAGAGGAGACGGAGCGGTCTTCAAGTGATGTACCCTAAGAGGAAGAGCACAGTTACGGTCAGCGTCTACTTGACGTGTAAGGGCTGCCTCAGGAAATTCCGACGTATCAAAACGAGTAGAAGTGTCACTCACGAGGTTCTCAACGAGTATTGCCTGACGTGTGGCGCGCGACTTTATACAGGAACTGCGAAGTTGAGTGCAGGCATTATCAAGGAGTTTGAAATCTTCGAGTGCCCCACCTGTAACGCAACGTTTCGTAAAGCGAGCAGCTTTGAGCAGCATAAACTGTTGCACAGCGAAGCGCGGGAGTTTGAATGTGACTATTGTCACCTGCGGTTCAGAACGAAGACGTTCGTACGGTCCCACATCGCCAAGCATGTGGCGTGCAAGTACCAATGTCACATGTGTGGGCTCAAGTTCAGGTATGCGAAGAAGCTGAAGAGCCACTATGTACAACATGTGGATGAGTTTGTAGGGTTTGATATTGCTGACTATGTGAAGACGTTCGAATGTCACCTGTGTGCGGATGTGTTCTACCAGCGACACAAGATGATCAAACATCTGCAAGGCCACGAGATTGCGAGCACGGATGAGGAGAATGTGACGGATCAAGAGATAGAGTCACTTGATCCGTCCGGATCCAGCAACCACCAGCTACAACCGGAAGAGATAGGTCAGAATGAAAGGATTGGAGAAGCGTGTGATAACGCCTTTGATAAGGATATACCTGATATCTACGATGATGATATGGACTACAATGATTATGAACTGACTCACGGACAGACGGACCAGGTAAACCAACCGGAAGAGAAAAACCGGCCGTTTTCGTGCACCGTTTGCAAAAAGTCGTTCCCGCAAAAGGTCAATCTCAAACGACACTTTGTTGTGAAACACAAAGAGTGCGAAAAAGAGCGTTGTGACATCTGCGGGAAGGAATTCAAATCGAAGGATTCGCTCAAGCAGCATCAGTTAATACATAAACCACACCGTTTCAAATGTGACCACTGTGATAGAACTTTCCACCAAAAGAATGCGTTTCTATCGCATCTTCGGCTTCATTCGAAAACGAAAGTGTTTCAGTGTACGGTTTGCAAAAAGTCGTTCGCAAAAGAGATCTGTCTCAAACGACACTTTGTCGTGCAACACACGGAGTACGAAAAGGAACGTTGTGACTTCTGCAGGAAAGAGTTCAAAACGAAGAAATCCCTCCAGCAGCATTACTTGCTGCATACACCGCACAGTTTCAAATGCGACCACTGTGATAGAACTTTCAGCCGAAAGGATTCGCTTCTATCACATCTTCGGCTTCATTCGAAAACAAAGGCGTTTCAGTGTGCGGTGTGCAAGAAGAGTTTCTTTCAAAAGCAAACGCTTACCTCTCACATGGCGCGACATAAAGAGAGAGCCTACGCGTGCACCGTCTGCGGTAAGCAATTCTACTTGAAGTCAACGCTGAATACGCATGCGCTGACGCATTCGGATACGAAAACGTTCCACTGTGACGTTTGCGAGAAGAGTTTCTATACGCGGCAATCGCTGTACACTCACGTGGCGCGGCATAGAGAGGAGAAACTTCAGTGTAGCCTTTGTGAAAAACAATACCCCGACAGATCTCGGCTGAACCGTCACTATCTCTCGCATTCGCGCCCGAAACGGCAGAGGCTCAATCTCCAGTGCAAATATTGCGAGAAGACTTTCTGTCGTCATTTTCACTATGCGCGTCATACGAAATGGCATGAGAAAAAAGGAAGCGTACCGACAAATGACAAAGAGGTCCAAGATGAGAGCATTGTTGAGAAGATTGATAAAGAACCGACGAAAAGTAAGACAAAAGAGAATGCCACTAAGAAAATTGTTAAGAAAAAAGCAACAGTGAGCAAAAAATCGAGTAGGAAATGTACCAAACctagtaatgaaaataatggTGATAACTAG
- Protein Sequence
- MVNIHSMIPMELPPTMEVLAPPPQLIPNSTSKPVKDRPFQCETCFRRFSLKKTLQQHILTHTGERPFPCPLCPKRFSRQDKVHRHMLVHTGEKPFACTACDKRFGQKGSLMLHLKLHQDAPKEFRCSVCWKEFTRKVYLSRHLATHDERPRLKCACCERDFLNKESLRQHEKNQERRRSGLQVMYPKRKSTVTVSVYLTCKGCLRKFRRIKTSRSVTHEVLNEYCLTCGARLYTGTAKLSAGIIKEFEIFECPTCNATFRKASSFEQHKLLHSEAREFECDYCHLRFRTKTFVRSHIAKHVACKYQCHMCGLKFRYAKKLKSHYVQHVDEFVGFDIADYVKTFECHLCADVFYQRHKMIKHLQGHEIASTDEENVTDQEIESLDPSGSSNHQLQPEEIGQNERIGEACDNAFDKDIPDIYDDDMDYNDYELTHGQTDQVNQPEEKNRPFSCTVCKKSFPQKVNLKRHFVVKHKECEKERCDICGKEFKSKDSLKQHQLIHKPHRFKCDHCDRTFHQKNAFLSHLRLHSKTKVFQCTVCKKSFAKEICLKRHFVVQHTEYEKERCDFCRKEFKTKKSLQQHYLLHTPHSFKCDHCDRTFSRKDSLLSHLRLHSKTKAFQCAVCKKSFFQKQTLTSHMARHKERAYACTVCGKQFYLKSTLNTHALTHSDTKTFHCDVCEKSFYTRQSLYTHVARHREEKLQCSLCEKQYPDRSRLNRHYLSHSRPKRQRLNLQCKYCEKTFCRHFHYARHTKWHEKKGSVPTNDKEVQDESIVEKIDKEPTKSKTKENATKKIVKKKATVSKKSSRKCTKPSNENNGDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443091;
- 90% Identity
- iTF_00443091;
- 80% Identity
- -