Dcit003135.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125322.1:7779950-7782352[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00018 0.016 17.1 2.9 1 23 39 61 39 61 0.99 2 20 4e-06 0.00035 22.2 1.1 1 23 67 89 67 89 0.98 3 20 0.00044 0.039 15.8 0.4 1 23 95 117 95 117 0.96 4 20 6.8e-06 0.0006 21.5 1.1 1 23 124 146 124 146 0.98 5 20 6 5.3e+02 2.8 0.3 2 12 199 209 198 212 0.89 6 20 0.00023 0.02 16.7 0.7 1 23 250 272 250 272 0.96 7 20 0.0025 0.22 13.4 3.9 1 23 278 300 278 300 0.98 8 20 0.00065 0.057 15.3 3.9 1 23 305 327 305 327 0.95 9 20 0.48 43 6.2 3.2 1 23 343 365 343 365 0.97 10 20 1.8e-05 0.0016 20.2 1.7 1 23 450 473 450 473 0.91 11 20 9.9e-07 8.7e-05 24.2 0.8 2 23 480 501 480 501 0.97 12 20 0.00064 0.056 15.3 6.2 1 23 506 528 506 528 0.98 13 20 0.0026 0.23 13.4 3.1 1 23 534 557 534 557 0.91 14 20 0.00084 0.074 14.9 3.2 2 23 564 585 564 585 0.96 15 20 8.1e-07 7.1e-05 24.4 3.7 1 23 590 612 590 612 0.98 16 20 2.5e-05 0.0022 19.7 2.1 1 23 618 640 618 640 0.98 17 20 5.5e-05 0.0048 18.7 0.6 1 23 645 667 645 667 0.97 18 20 0.00099 0.087 14.7 2.8 1 23 673 695 673 695 0.97 19 20 0.00079 0.07 15.0 0.8 2 23 701 722 700 722 0.97 20 20 0.0078 0.69 11.9 9.5 2 23 733 754 732 754 0.96
Sequence Information
- Coding Sequence
- ATGGTAAACATCCATTCTATGATTCCTATGGAGTTACCTCCTACGATGGAGGTGCTTGCACCACCGCCACAGCTCATATCAAACTCAACGTCTAAACCGGTAAAAGATCGACCTTTCCAATGTGAAACCTGTTTCCGTCGGTTCAGCTTAAAGAAAACGCTGCAACAGCACATCCTAACGCACACGGGGGAAAGGCCGTTCCCGTGTCCACTTTGTCCCAAGAGGTTCAGTCGCCAAGACAAGGTCCACCGCCACATGTTGGTTCACACCGGCGAAAAGCCGTTCGCCTGCACCGCGTGCGACAAACGATTTGGTCAGAAGGGCTCCCTCATGTTACACCTGAAGCTTCACCAAGACGCGCCGAAAGAGTTCAGGTGCAGCGTCTGTTGGAAGGAGTTCACGAGAAAGGTGTACCTGTCCCGTCACTTGGCAACGCACGATGAACGACCCAGACTGAAGTGCGCCTGCTGTGAGAGAGACTTCCTCAATAAGGAGAGTCTTCGACAACACGAGAAGAACCAGGAGAGGAGACGGAGCGGTCTTCAAGTGATGTACCCTAAGAGGAAGAGCACAGTTACGGTCAGCGTCTACTTGACGTGTAAGGGCTGCCTCAGGAAATTCCGACGTATCAAAACGAGTAGAAGTGTCACTCACGAGGTTCTCAACGAGTATTGCCTGACGTGTGGCGCGCGACTTAATACAGGAACTGCGAAGTTGAGTGCAGGCATTATCAAGGAGTTTGAAATCTTCGAGTGCCCCACCTGTAACGCAACGTTTCGTAAAGCGAGCAGCTTTGAGCAGCATAAACTGTTACACAGCGAAGCGCGGGAGTTTGAATGTGACTATTGTCACCTGCGGTTCAGAACGAAGACGTTCGTACGGTCCCACATCGCCAAGCATGTGGCGTGCAAGTACCAATGTCACATGTGTGGGCTCAAATTCAGGTATGCGAAGAAGCTGAAGAGCCACTATGTACAACATGTGGATGAGTTTGTAGGGTTTGATATTGCTGACTATGTGAAGACGTTCGAATGTCACCTGTGTGCGGATGTGTTCTACCAGCGACACAAGATGATCAAACATCTGCAAGGCCACGAGATTGCGAGCACGGATGAGAATGTGACGGATCAAGAGATAGAGTCACTTGATCCGTCCGGATCCAGCAACCACCAGCTACAACCGGAAGAGATAGGTCAGAATGAAAGGATTGGAGAAGCGTGTGATAACGCCTTTGATAAGGATATACCTGATATCTACGATGATGATATGGACTACAATGATTATGAACTGACTCACGGACAGACGGACCAGGTAAACCAACCGGAAGAGACGGACAAAAACCGGCCGTTTTCGTGCACCGTTTGCAAAAAGTCGTTCCCGCAAAAGGTCAATCTCAAACGACACTTTGTTGTGAAACACAAAGAGTGCGAAAAAGAGCGTTGTGACATCTGCGGGAAGGAATTCAAATCGAAGGATTCGCTCAAGCAGCATCAGTTAATACATAAACCACACCGTTTCAAATGTGACCACTGTGATAGAACTTTCCACCAAAAGAATGCGTTTCTATCGCATCTTCGGCTTCATTCGAAAACGAAAGCGTTTCAGTGTACGGTTTGCAAAAAGTCGTTCGCGAAAGAGATCTGTCTCAAACGACACTTTGTCGTGCAACACACGGAGTACGAAAAGGAACGTTGTGACTTCTGCAGGAAAGAGTTCAAAACGAAGAAATCCCTCCAGCAGCATTACTTGCTGCATACACCGCACAGTTTCAAATGCGACCACTGTGATAGAACTTTCAGCCGAAAGGATTCGCTTCTATCACATCTTCGGCTTCATTCGAAAACAAAGGCGTTTCAGTGTGCGGTGTGCAAGAAGAGTTTCTTTCAAAAGCAAACGCTTACCTCTCACATGGCGCGACATAAAGAGAGAGCCTACGCGTGCACCGTCTGCGGTAAGCAATTCTACTTGAAGTCAACGCTGAATACGCATGCGCTGACTCATTCGGATACGAAAACGTTCCACTGTGACGTTTGCGAGAAGAGTTTCTATACGCGGCAATCGCTGTACACTCACGTGGCGCGGCATAGAGAGGAGAAACTTCAGTGTAGCCTTTGTGAAAAACAATACCCCGACAGATCTCGGCTGAACCGTCACTATCTCTCGCATTCGCGCCCGAAACGGCAGAGGCTCAATCTCCAGTGCAAATATTGCGAGAAGACTTTCTGTCGTCATTTTCACTATGCGCGTCATACGAAATGGCATGAGAAAAAAGGAAGCGTACCGACAAATGACAAAGAGGTCCAAGATGAGAGCATTGTTGAGAAGATTGATAAAGAACCGACGAAAAGTAAGACAAAAGAGAATGCCACACTAAGAAAATTGTTAAGAAAAAAGCAACAGTGA
- Protein Sequence
- MVNIHSMIPMELPPTMEVLAPPPQLISNSTSKPVKDRPFQCETCFRRFSLKKTLQQHILTHTGERPFPCPLCPKRFSRQDKVHRHMLVHTGEKPFACTACDKRFGQKGSLMLHLKLHQDAPKEFRCSVCWKEFTRKVYLSRHLATHDERPRLKCACCERDFLNKESLRQHEKNQERRRSGLQVMYPKRKSTVTVSVYLTCKGCLRKFRRIKTSRSVTHEVLNEYCLTCGARLNTGTAKLSAGIIKEFEIFECPTCNATFRKASSFEQHKLLHSEAREFECDYCHLRFRTKTFVRSHIAKHVACKYQCHMCGLKFRYAKKLKSHYVQHVDEFVGFDIADYVKTFECHLCADVFYQRHKMIKHLQGHEIASTDENVTDQEIESLDPSGSSNHQLQPEEIGQNERIGEACDNAFDKDIPDIYDDDMDYNDYELTHGQTDQVNQPEETDKNRPFSCTVCKKSFPQKVNLKRHFVVKHKECEKERCDICGKEFKSKDSLKQHQLIHKPHRFKCDHCDRTFHQKNAFLSHLRLHSKTKAFQCTVCKKSFAKEICLKRHFVVQHTEYEKERCDFCRKEFKTKKSLQQHYLLHTPHSFKCDHCDRTFSRKDSLLSHLRLHSKTKAFQCAVCKKSFFQKQTLTSHMARHKERAYACTVCGKQFYLKSTLNTHALTHSDTKTFHCDVCEKSFYTRQSLYTHVARHREEKLQCSLCEKQYPDRSRLNRHYLSHSRPKRQRLNLQCKYCEKTFCRHFHYARHTKWHEKKGSVPTNDKEVQDESIVEKIDKEPTKSKTKENATLRKLLRKKQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443091;
- 90% Identity
- iTF_00443091;
- 80% Identity
- -