Basic Information

Insect: Diaphorina citri
Gene Symbol: -
Assembly: GCA_000475195.1
Location: CP125324.1:37162696-37177861[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00037 0.033 16.1 2.8 1 23 363 385 363 385 0.97

2 19 0.0014 0.12 14.2 2.6 1 20 391 410 391 413 0.93

3 19 0.00032 0.028 16.3 1.8 1 23 419 441 419 441 0.99

4 19 0.079 6.9 8.7 7.5 1 21 447 467 447 469 0.94

5 19 3.2e-06 0.00029 22.5 4.5 1 23 475 497 475 497 0.99

6 19 0.00011 0.0093 17.8 3.6 1 23 503 525 503 525 0.97

7 19 1.4e-06 0.00013 23.7 4.1 1 23 531 553 531 553 0.98

8 19 2.1e-06 0.00019 23.1 3.8 1 23 559 581 559 581 0.98

9 19 0.00015 0.013 17.3 6.7 1 23 587 609 587 609 0.97

10 19 3.3e-05 0.0029 19.4 5.7 1 23 615 637 615 637 0.98

11 19 3.3e-05 0.0029 19.4 5.7 1 23 643 665 643 665 0.98

12 19 4.6e-07 4e-05 25.2 2.4 1 23 671 693 671 693 0.98

13 19 2.1e-05 0.0018 20.0 7.1 1 23 699 721 699 721 0.98

14 19 3.2e-05 0.0028 19.4 9.5 1 23 727 749 727 749 0.98

15 19 0.00038 0.033 16.0 7.6 1 23 755 777 755 777 0.98

16 19 0.017 1.5 10.8 3.5 1 23 783 805 783 805 0.97

17 19 0.00011 0.0098 17.7 0.5 1 23 811 833 811 833 0.97

18 19 0.0013 0.11 14.3 3.8 1 23 845 867 845 867 0.99

19 19 0.016 1.4 10.9 8.1 1 23 873 896 873 896 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00037	0.033	16.1	2.8	1	23	363	385	363	385	0.97
2	19	0.0014	0.12	14.2	2.6	1	20	391	410	391	413	0.93
3	19	0.00032	0.028	16.3	1.8	1	23	419	441	419	441	0.99
4	19	0.079	6.9	8.7	7.5	1	21	447	467	447	469	0.94
5	19	3.2e-06	0.00029	22.5	4.5	1	23	475	497	475	497	0.99
6	19	0.00011	0.0093	17.8	3.6	1	23	503	525	503	525	0.97
7	19	1.4e-06	0.00013	23.7	4.1	1	23	531	553	531	553	0.98
8	19	2.1e-06	0.00019	23.1	3.8	1	23	559	581	559	581	0.98
9	19	0.00015	0.013	17.3	6.7	1	23	587	609	587	609	0.97
10	19	3.3e-05	0.0029	19.4	5.7	1	23	615	637	615	637	0.98
11	19	3.3e-05	0.0029	19.4	5.7	1	23	643	665	643	665	0.98
12	19	4.6e-07	4e-05	25.2	2.4	1	23	671	693	671	693	0.98
13	19	2.1e-05	0.0018	20.0	7.1	1	23	699	721	699	721	0.98
14	19	3.2e-05	0.0028	19.4	9.5	1	23	727	749	727	749	0.98
15	19	0.00038	0.033	16.0	7.6	1	23	755	777	755	777	0.98
16	19	0.017	1.5	10.8	3.5	1	23	783	805	783	805	0.97
17	19	0.00011	0.0098	17.7	0.5	1	23	811	833	811	833	0.97
18	19	0.0013	0.11	14.3	3.8	1	23	845	867	845	867	0.99
19	19	0.016	1.4	10.9	8.1	1	23	873	896	873	896	0.97

Sequence Information

Coding Sequence: ATGTATGGGCTAAATTCTAATCCATGCAGTAAGAATGGTGTTGAAACTTCAGTCATTTCTTCTGGCAAATCCATAACCTCCTTGCAAGACCCACAGCAAGGCCTAGTGGGAAGTTCCAGTGGTGAAAGTTCTTGCTTGTTATATTCCAACAACAGATGCAAGGACAAGTTGGAACCCCTGGACCCCCAGGCAAACAATTCAGCCATGTCAGGCTctgagATCCAGTGTGAACTATCTCAGTTTCCTGCATCTCACAAGACCAGCACCTCCATGGAGGTTGATACACCTCCACCTCCCTCCTCCAGCAGAGGCTCTGAACCTCCCTCTCCCAACACTGGAGGTGTGTCGGGTGGGTTCATCTCAACGTCACCTAGTCAACCATCACCTCAACATGGTCACCATACGTTAACCTCATTGACATCACCACATCAGATGCCTCCACCAAGTCCGATAGccacctccccctccccctccgcGTCTGATAAACATGATAGCCAGTCCTCACCTCATATTACACAACACACAGGACCCGGTATATTCCAATCCCCACCACCCACCTCTCATATCTCCAAGTCAGCTAATGCAGCAGGGGGAGGGGGTGGGTCCAATGGACAGACTCATCTTCATATTCAGAACATTGGAGCAGTGTTATCCCCATCTTATGGACAACACTGTATACAACAAGATGATACTCAGCATAGTACAGTACAGCAGCAGCAGTATCAACAGATGGATACTAGTCAATCATCTCAACAGCAGAGTGATCTGATCAAAACTAATGGTACAGGAGATGTGAAGGATCCTAGCCTACTCTCTGTCGATATGTACAAGGTGAATCCAGATGAGTTCAATCAACTCTTAGCTTACCATGAAGTGTTTGGAAAGCTACAATCCTCTGTAGTGACCCATACATCATCCACATTGGGACTAGCTAGTACATCTACAGCTCAGGGAGATATGAACAGCGCAGCAGACAATGGTGTATCAGGTACCAACTCCGTGATTACTAACAATTCCACTGAGAATAATACAACTAGTATCACTCTGGATATCAAGGCAGACCTAGACCTCCCTGTGATGGGAAACCATACCTGTGATTTGTGTGGCAAGTTCTTTCCCTATCGATACCAGATGATTGTACATAGGAGATACCATACCGAACGTAAACCATTCACCTGTCATGTATGTGGCAAGGCGTTCGACTTCCAAGCAGAGCTGATGAGTCATGGGAAATGTCACCTAGGGGGTTCCATGTACACATGTGCCGTCTGTTTCCATGTGTTTGCCAATGAGGAATCTCTACAGAGACATACCAAGCGACACTCTATAGACAGACCCTACTGCTGCTCTGTCTGTATGAAGACATTCGCTAGGAAGGAACATCTCGAGAATCACACCAGATGTCACACCGGGGAGACCCCGTACAAGTGTCAGTATTGTGGTAAAAACTTCAGTCGGAAAGAGCATATGGTGAACCATGTTAGAAAACACACTGGTGAAACACCACATCGCTGTGAGATTTGCAAGAAAGCGTTCACGAGGAAGGAACATTATGTGAATCATGTTATGTGGCATACTGGTGAAACACCACATGTATGTCAGGTATGTGGTAAGAAGTATACAAGGAAAGAGCACCTAGCTAATCACATGAGATCTCATACAAATGATACCCCGTTCAAATGTGAAATCTGTACCAAGAGTTTCACAAGGAAAGAACATTTCACCAATCACATCATGTGGCATACAgGTGAAACGCCACATCGTTGTGACTTCTGCTCCAAGACATTCACTCGTAAAGAACATCTTCTGAATCATGTACGTCAACATACAGGCGAGTCTCCACACAAGTGTAACTACTGTGCCAAGAGTTTCACACGTAAGGAGCATCTGGTCAATCATGTCAGACAACACACAGGAGACAGTCCTCACAAGTGTAACTACTGTGCCAAGAGTTTTACACGTAAGGAGCATCTGGTCAATCATGTTAGACAGCACACAGGAGAGACACCATACCAGTGTCAATATTGTCCCAAAGCATTCTCCCGCAAGGATCACCTGGTGAATCATGTACGACAACATACTGGCGAGTCCCCACACAAGTGTTCCTATTGTAAACAGAGTTTTACAAGGAAAGATCATCTCAACAATCATGTACGTTTACACACGGGAGAGAGTCCACACAAATGTCACTTCTGTAGTAAAAGTTTCACGCGTAAGGAACATTTAAATAATCATATTCGACTACATACCGGTGAAAGTCCTCACAAGTGTGACTTCTGTCTCAAGACATTCACTCGCAAGGAACATCTGACCAATCATCTGAAACAACATGCAGGCGAGACAGAACATGTGTGTAACATCTGTAGCAAACCATTCCTCAAGAAGGAACACCTGGTGAATCACTCGAGATCTCATACAGGTGAACGCCCGTTTGCCTGTACAGACTGTGGCAAGTCATTCCCACTGAAAGGGAATCTATTGTTCCATCAGAGATCTCATAGGAAGCAGAATGGTGAAGTATTGGAACGTCCGTTCAAATGTGATGTGTGTCCCAAGGACTTTACATGCAAGGGACATCTTGTATCCCATCTCAGATCTCATCTCAATGAGAGACCTCATGTCTGTCCTCACTGCTCTAAATCATTCGTTGAGCATACCTGCATGATCAAACATATTCGCAAGAATCATACCCTCGCCAATGTCAATGTGAGCCCTATGAATAGTGTAGGGACGCAGCATAACATGCTCCCCCATACAATGAGTAGTATCCCATTATCACATAGCATGAGTACCATTACACATACCAATAACACAACCACACCTGTAGCACCCATAGCACTGGTGGTCCCTGTAGCACATCAAGCACCACCACTTGCCAGTTACTAG
Protein Sequence: MYGLNSNPCSKNGVETSVISSGKSITSLQDPQQGLVGSSSGESSCLLYSNNRCKDKLEPLDPQANNSAMSGSEIQCELSQFPASHKTSTSMEVDTPPPPSSSRGSEPPSPNTGGVSGGFISTSPSQPSPQHGHHTLTSLTSPHQMPPPSPIATSPSPSASDKHDSQSSPHITQHTGPGIFQSPPPTSHISKSANAAGGGGGSNGQTHLHIQNIGAVLSPSYGQHCIQQDDTQHSTVQQQQYQQMDTSQSSQQQSDLIKTNGTGDVKDPSLLSVDMYKVNPDEFNQLLAYHEVFGKLQSSVVTHTSSTLGLASTSTAQGDMNSAADNGVSGTNSVITNNSTENNTTSITLDIKADLDLPVMGNHTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIRKNHTLANVNVSPMNSVGTQHNMLPHTMSSIPLSHSMSTITHTNNTTTPVAPIALVVPVAHQAPPLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -