Dcit012376.2
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125324.1:36489775-36494667[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0016 2 9.9 5.0 13 38 19 45 9 46 0.74 2 14 0.013 17 6.9 2.6 5 30 40 65 38 74 0.82 3 14 0.0055 7.2 8.1 4.1 17 38 79 101 68 103 0.83 4 14 0.093 1.2e+02 4.2 4.6 6 35 97 126 96 135 0.77 5 14 0.031 41 5.7 2.9 6 33 121 152 120 158 0.69 6 14 0.007 9.1 7.8 4.9 5 38 152 185 149 186 0.79 7 14 0.01 13 7.3 4.3 16 38 190 213 180 214 0.75 8 14 0.00083 1.1 10.8 1.1 5 38 208 241 205 248 0.85 9 14 0.33 4.3e+02 2.5 3.3 13 30 243 261 236 270 0.70 10 14 0.24 3.1e+02 2.9 3.3 7 31 266 289 260 298 0.71 11 14 0.002 2.6 9.5 3.6 17 38 303 325 290 332 0.86 12 14 0.57 7.4e+02 1.7 0.8 15 26 329 340 326 353 0.75 13 14 0.0068 8.8 7.9 0.7 18 41 394 418 390 422 0.88 14 14 0.0026 3.3 9.2 6.8 18 43 422 444 418 445 0.94
Sequence Information
- Coding Sequence
- ATGAAGACATTCGCTAGGAAGGAACATCTCGAGAATCACACCAGATGTCACACCGGGGAGACCCCGTACAAGTGTCAGTATTGTGGTAAAAACTTCAGTCGGAAAGAGCATATGGTGAACCATGTTAGAAAACACACTGGTGAAACACCACATCGCTGTGAGATTTGCAAGAAAGCGTTCACGAGGAAGGAACATTATGTGAATCATGTTATGTGGCATACTGGTGAAACACCACATGTATGTCAGGTATGTGGTAAGAAGTATACAAGGAAAGAGCACCTAGCTAATCACATGAGATCTCATACAAATGATACCCCGTTCAAATGTGAAATCTGTACCAAGAGTTTCACAAGGAAAGAACATTTCACCAATCACATCATGTGGCAtacagGTGAAACGCCACATCGTTGTGACTTCTGCTCCAAGACATTCACTCGTAAAGAACATCTTCTGAATCATGTACGTCAACATACAGGCGAGTCTCCACACAAGTGTAACTACTGTGCCAAGAGTTTCACACGTAAGGAGCATCTGGTCAATCATGTCAGACAACACACAGGAGACAGTCCTCACAAGTGTAACTACTGTGCCAAGAGTTTTACACGTAAGGAGCATCTGGTCAATCATGTTAGACAGCACACAGGAGAGACACCATACCAGTGTCAATATTGTCCCAAAGCATTCTCCCGCAAGGATCACCTGGTGAATCATGTACGACAACATACTGGCGAGTCCCCACACAAGTGTTCCTATTGTAAACAGAGTTTTACAAGGAAAGATCATCTCAACAATCATGTACGTTTACACACGGGAGAGAGTCCACACAAATGTCACTTCTGTAGTAAAAGTTTCACGCGTAAGGAACATTTAAATAATCATATTCGACTACATACCGGTGAAAGTCCTCACAAGTGTGACTTCTGTCTCAAGACATTCACTCGCAAGGAACATCTGACCAATCATCTGAAACAACATGCAGGCGAGACAGAACATGTGTGTAACATCTGTAGCAAACCATTCCTCAAGAAGGAACACCTGGTGAATCACTCGAGATCTCATACAGGTGAACGCCCGTTTGCCTGTACAGACTGTGGCAAGTCATTCCCACTGAAAGGGAATCTATTGTTCCATCAGAGATCTCATAGGAAGCAGAATGGTGAAGTATTGGAACGTCCGTTCAAATGTGATGTGTGTCCCAAGGACTTTACATGCAAGGGACATCTTGTATCCCATCTCAGATCTCATCTCAATGAGAGACCTCATGTCTGTCCTCACTGCTCTAAATCATTCGTTGAGCATACCTGCATGATCAAACATATTCGCAAGAATCATACCCTCGCCAATGTCAATGTGAGCCCTATGAATAGTGTAGGGACGCAGCATAACATGCTCCCCCATACAATGAGTAGTATCCCATTATCACATAGCATGAGTACCATTACACATACCAATAACACAACCACACCTGTAGCACCCATAGCACTGGTGGTCCCTGTAGCACATCAAGCACCACCACTTGCCAGTTACTAG
- Protein Sequence
- MKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIRKNHTLANVNVSPMNSVGTQHNMLPHTMSSIPLSHSMSTITHTNNTTTPVAPIALVVPVAHQAPPLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443089;
- 90% Identity
- iTF_00443089;
- 80% Identity
- iTF_00443089;