Dcit044078.1
Basic Information
- Insect
- Diaphorina citri
- Gene Symbol
- -
- Assembly
- GCA_000475195.1
- Location
- CP125333.1:60387634-60389087[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.8e-06 0.0036 18.7 0.1 16 43 22 46 14 47 0.91 2 10 1.4e-05 0.018 16.4 0.3 15 43 82 107 74 108 0.83 3 10 2 2.6e+03 -0.0 0.2 19 39 114 135 110 138 0.71 4 10 0.14 1.8e+02 3.6 0.2 15 43 150 175 144 176 0.80 5 10 0.04 52 5.4 1.5 19 32 211 224 208 233 0.74 6 10 0.037 48 5.5 3.7 12 43 233 261 222 262 0.78 7 10 0.0033 4.4 8.8 1.8 16 39 265 285 263 289 0.87 8 10 0.013 16 7.0 1.2 4 27 282 304 279 312 0.80 9 10 0.83 1.1e+03 1.2 0.8 6 35 312 341 304 350 0.76 10 10 2.6 3.4e+03 -0.4 0.3 17 41 350 371 339 373 0.74
Sequence Information
- Coding Sequence
- ATGGTTAATGTACACAGGTTATCTGATACCGAAGCAATTGAACCAAAACCTTCTAAATATATTAAAGTGGAATGTCCCGTATGTGGTAAAGTGCTGTCAAGAAAAAGCAAACTAGTATCGCACATGCGCAGTTTTCATACTAGCGTGACCCCTGAAGCAGGAGGAGACAACAACGACACATCAGGTCATATGAGTCAAATCCAGACTATGTTGATGCTAGATCATAAGAAACCCAAATCCAGAGCTCCTGTTGAATGTTCCTACTGTGGTAAAGTTCTATCTCGCAAAGATAAGCTGACGCGACACATTGCTGCTGTCCACTCTGGTAAGGAGTATCCGTGTGAACAATGTGATAGGAAGTTTACCAATGGTTACAAGTTGAAGCAGCATATGTTAACACACATGCAGAAGGATACGTCCATCTCCATTGATGTGATCAGCgaaatcaaaaagttcaagtgtgaTCAATGTGACTATGCCACCAAAGATAAATACAACTTGGGAACTCATATCAAGCGAAGACATACCAAGGAGTACTCGGTGCTGTGTACACAATGTGGCTTTGGCTGTTATACCAACAGGGAACTGGAGGAGCATCAAATCCTAACGCATGGTGCTGAGCCTTACCATTGTAAATATTGTGATAAAACATTTACCAAACGCATGAATGTGAAGACGCACGAACGTATGAAACATGAGAACCACAAACCTTACGAGTGTTACATTTGTAACAAGATCCTGGTGTCCCGGGGCAGACTCAATGAACATTTGAACCAAGTTCATCTCGCACAGAGGTTTGAATGTAAACTTTGCCACAAGACGATCGTGTCGGAGAAAACATTCAAGAAGCACATGGCGCTGCACAGTGATGCCAAACCTTTCGTGTGTAACATTTGTGGCAAGGATTTCAAACTAAAGTACTATGTCAACTTACACATGAGGACACATACAAGGATTCGACCGACATTTGAGTGTGATGTCTGTCATCAAATCTTCCCTACTGACTTCCGCACGAAACATATGTTAGTTCATGATGTAGAGAAGTCACATCTCTGCTTTGTATGTGGTGCAGGCTTTGTGAATGATGCAGGACTTAAAGTTCACATGAGGAAACATCAATAG
- Protein Sequence
- MVNVHRLSDTEAIEPKPSKYIKVECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01132384;
- 90% Identity
- iTF_00443055; iTF_00443124; iTF_00443125;
- 80% Identity
- iTF_00443055; iTF_00443124; iTF_00443125;