Dmen001221.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- -
- Assembly
- GCA_949125395.1
- Location
- OX421310.1:14991062-15004146[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.22 30 6.7 0.2 2 23 462 484 461 484 0.96 2 13 0.00033 0.044 15.7 1.6 2 23 489 510 488 510 0.97 3 13 0.24 32 6.6 1.6 2 23 514 535 513 535 0.95 4 13 1.1 1.4e+02 4.6 0.6 1 23 540 563 540 563 0.92 5 13 0.11 15 7.7 0.1 2 23 621 643 620 643 0.93 6 13 0.0067 0.91 11.5 2.5 2 20 650 668 649 670 0.93 7 13 0.00047 0.063 15.2 2.3 1 21 679 699 679 700 0.93 8 13 0.28 38 6.4 2.3 1 23 708 731 708 731 0.94 9 13 8.8 1.2e+03 1.7 0.3 2 16 737 751 736 759 0.68 10 13 0.0033 0.44 12.5 0.1 2 23 769 790 768 790 0.94 11 13 0.18 24 7.0 0.1 3 23 818 837 817 837 0.95 12 13 4.1e-05 0.0055 18.5 2.7 2 23 843 864 842 864 0.87 13 13 2.2 3e+02 3.6 0.6 3 23 870 889 869 889 0.90
Sequence Information
- Coding Sequence
- ATGGCGGGAAACCAAATGTATAGGAAATGTTTTAAATGTGGAAGTTCATCATCTGAACCTGGCATTAAATTATTTCGTTTCCCTAAACCTGGGATTACGAACAGTGCTCGATGTGAGTTATGGGCAAAATTTTGCTTACCAGATGGAGAATGGTTCAAGAAAGAATTACATCAAAAGCTCAATAGCCAGCATAAAATGTTATGCAATAGACATTTTAAGAGCACTTCTTTCATGGATTACCCCGAGACTCGAACTAAGCTTCATCGAGCAGCTGTACCATATGAAGATAGTGAAAAGGGATCTCAGGAGAAAACAGGTATTCTTAAAAAGTTAATTGCCCAAAAATGCACAGAACCTTTACGCAACACATCTGCAATTGAATTGCCAAGAGAGTGTGCGAAAGAATCTGATTCAACTGAGACTGTCAGCGAAGCTGATGAGCTTGAATTGACAGAGTCCGAGCCTAATGAAACACATGGCACACCAGCTGACAAACCTCGAACTGTGAAGCAAGgtttcGGCATAGCAgtgaatactgtcctcatctttggtgCTGCTGCTCTGGCCATATACCCCAAGGAGGGTAGTGAGACAAAGGCTGCCCTCAAGCAGGTCATTAAGCCCAGCGAAATAGGGCCCAAATTGTCGGTCTACGtaCTTCAGTTGCGTTTACTAGAAGACGAAGGTGTTTGTGATGAACCAATATATGAAGTTCTGACAGATGATGAAACCGACAAGGAAGTGGACAAGAAACAAACGGCGACACAGACTGACGtgcaAAATACGTCTTCAAGTTTAAATGATTCGCCGAGCAAGGAGAGCTATGTTCAATCTGCACTACCAGCAACATCAGCCGAGAGAACAGCCCCGACATGTGACAAGTACACCAACAAGGAATACTGGAAGTTGATGCTGAAGCACATCCTCCACAACACGCAGTTCTGTGGAGTCTGTTTGGAGGCTGACGTCGACATGAACGCGCTCTCCCATGTGTTTGAGATCACTGACGATGAAAGGACTTGGAGCACGTCTCTCGCAGACATTGTACATAAGGTCTTCAGAGAGGGTGGGTATTGGCCGGCTAACTCACAAATATGCAACAATTGTACCAAGAAACTAATTCagtcttatatatttatacgcAATGCTGAAGAGACATCGAGAATGCTGGAGCGTCACTTAGATGAGTTGTACACTAAAACTTGCTACGTGCGTAACAAATCTCTGAAAGATGCCAACAGCACACAACCAAGGATATACAATGTTGTTATTGCATTAGACAATAAAGTGATTTCACAGAACTTTGAAAGTAacgaaattaaaatagaaacaccGGAACCAGAGCAAAGTGAAAGAAGTCAGATTCGCGTCAAAAGAAAACTGAGGTGTGTGAGTTGTAATGTGGTTGTACGGTCGTACAGAGCTTGGACGAGGCACGAGAGAACAGCTCACAAACAGAGTGTCAGATGTAGAATATGTCTCCAGAGCTACAAGACACAGCGGGCCTTGACTACACATTACAGGACGCATTTGAGGTCGCGCTGTCCGTTTTGTCACAGAACTGTGCGAGATGGTGCACTGTTGCAACATTTGAAGACGCGCCACAAACACTCGATACACTCGTGTACGACGTGTAATGTCGCTCTCTACTCCGCCGAGGCTCTAGGGACTCATATAGAGGAGTGTCATCGTAGAGAGGGTTCTAAATGTGTGACGTGTCTGCAGAGTTTGTCGCGAGTCGAGTTGGAGCGGCACCAGTGCAGGTTCAAGTGTCCGGAGTGTGAGGAGTTGCCTTGTGTCCATCACCGGCACTTGATGTGGTACAGAGAGCAGATGGACCTGGACCCTGGACCCAGGACCAAGTGTGCGGACTGTCGCTACGTGGCGTCCAGCAAGCAGGCTCTGTTAGCCCACGTCAACGCAACACATCTCAGTCAACAGTCTCTCCGCTGTGCCAGATGTGGACAGCACTTCTCTCGGCGAGCTCATTTAGATAAACATGTTTGTGCTTCTGGGAGAGGCAACAAACACCTCCACGAGTGTCAATATTGTGACAAGGCATTTAGCAATTTGTACATGTGGAAACGACACGAGAAACACTGTAAGGGTATTCAAAGGAGGTATCAGTGCGACGATTGTCCAGCTAATTTTGATTCGACAAAAGATCACATGAAACATAGAAAACTCAAGCACGGCAAAGAGTTCCTCTCGTGCAGGTTGTGTGACAGAGTGTTTCTAAACGACCTGAAGAGGACGAGACACGAACGGCAAGCCCACGGCGAACAGCGAGGAAGGGCGAGCTTAGTCTGTGCGGCGTGTCAAACTGAGTTCTCCTCGAAGGCGGACTTGGATCTGCACATGAGATACCATGGAGCTGAAGCAATGGGTCAGCTCGTCAGTTTGGGACAGTTGAAGAGTCACAAACACAGACGCAGACGTTCGTTTGCGGCGTGCGAAGTTTGTGGCGCAGTGATGAGGCGGACTCTGTTGAACAAACACATGAAAGGCCATTCTATGGCGACAGTGTCGTGTAAAACGTGCGGCAAATCCTTCCAGAGCTCGACTTTACTGAGACATCATCAGAGTATTCACGCGAGGACTGCGCCGTGTCCTAGATGTAAGAAATTGATTAGTTCCGCAAAGTTATGGCGACACTTCAGGAATCACCTCATTCGAGACTCTCTTAATGTCAAAGTTGCTGCAATACATGCTCTATGA
- Protein Sequence
- MAGNQMYRKCFKCGSSSSEPGIKLFRFPKPGITNSARCELWAKFCLPDGEWFKKELHQKLNSQHKMLCNRHFKSTSFMDYPETRTKLHRAAVPYEDSEKGSQEKTGILKKLIAQKCTEPLRNTSAIELPRECAKESDSTETVSEADELELTESEPNETHGTPADKPRTVKQGFGIAVNTVLIFGAAALAIYPKEGSETKAALKQVIKPSEIGPKLSVYVLQLRLLEDEGVCDEPIYEVLTDDETDKEVDKKQTATQTDVQNTSSSLNDSPSKESYVQSALPATSAERTAPTCDKYTNKEYWKLMLKHILHNTQFCGVCLEADVDMNALSHVFEITDDERTWSTSLADIVHKVFREGGYWPANSQICNNCTKKLIQSYIFIRNAEETSRMLERHLDELYTKTCYVRNKSLKDANSTQPRIYNVVIALDNKVISQNFESNEIKIETPEPEQSERSQIRVKRKLRCVSCNVVVRSYRAWTRHERTAHKQSVRCRICLQSYKTQRALTTHYRTHLRSRCPFCHRTVRDGALLQHLKTRHKHSIHSCTTCNVALYSAEALGTHIEECHRREGSKCVTCLQSLSRVELERHQCRFKCPECEELPCVHHRHLMWYREQMDLDPGPRTKCADCRYVASSKQALLAHVNATHLSQQSLRCARCGQHFSRRAHLDKHVCASGRGNKHLHECQYCDKAFSNLYMWKRHEKHCKGIQRRYQCDDCPANFDSTKDHMKHRKLKHGKEFLSCRLCDRVFLNDLKRTRHERQAHGEQRGRASLVCAACQTEFSSKADLDLHMRYHGAEAMGQLVSLGQLKSHKHRRRRSFAACEVCGAVMRRTLLNKHMKGHSMATVSCKTCGKSFQSSTLLRHHQSIHARTAPCPRCKKLISSAKLWRHFRNHLIRDSLNVKVAAIHAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442067;
- 90% Identity
- -
- 80% Identity
- -