Basic Information

Insect: Diaphora mendica
Gene Symbol: RREB1
Assembly: GCA_949125395.1
Location: OX421333.1:9361775-9366176[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.091 12 8.0 0.4 1 23 81 104 81 104 0.94

2 12 0.12 16 7.6 0.5 1 22 146 167 146 167 0.95

3 12 0.023 3.1 9.9 0.1 1 23 296 318 296 318 0.97

4 12 0.0012 0.17 13.9 0.4 1 23 327 349 327 349 0.99

5 12 0.00076 0.1 14.5 2.0 1 23 355 378 355 378 0.97

6 12 0.0031 0.41 12.6 1.6 1 23 726 749 726 749 0.96

7 12 0.00026 0.034 16.0 1.3 2 23 943 964 942 964 0.97

8 12 0.11 15 7.7 6.5 1 23 970 993 970 993 0.97

9 12 0.031 4.2 9.4 1.8 1 23 1026 1050 1026 1050 0.94

10 12 0.0058 0.79 11.7 0.4 1 23 1074 1097 1074 1097 0.97

11 12 0.0019 0.25 13.3 0.2 2 23 1137 1158 1136 1158 0.96

12 12 0.029 3.9 9.5 5.3 1 23 1164 1186 1164 1186 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.091	12	8.0	0.4	1	23	81	104	81	104	0.94
2	12	0.12	16	7.6	0.5	1	22	146	167	146	167	0.95
3	12	0.023	3.1	9.9	0.1	1	23	296	318	296	318	0.97
4	12	0.0012	0.17	13.9	0.4	1	23	327	349	327	349	0.99
5	12	0.00076	0.1	14.5	2.0	1	23	355	378	355	378	0.97
6	12	0.0031	0.41	12.6	1.6	1	23	726	749	726	749	0.96
7	12	0.00026	0.034	16.0	1.3	2	23	943	964	942	964	0.97
8	12	0.11	15	7.7	6.5	1	23	970	993	970	993	0.97
9	12	0.031	4.2	9.4	1.8	1	23	1026	1050	1026	1050	0.94
10	12	0.0058	0.79	11.7	0.4	1	23	1074	1097	1074	1097	0.97
11	12	0.0019	0.25	13.3	0.2	2	23	1137	1158	1136	1158	0.96
12	12	0.029	3.9	9.5	5.3	1	23	1164	1186	1164	1186	0.97

Sequence Information

Coding Sequence: ATGTACTCTTTTGTTACAGAAATCAAAACAGAGGAGGTAATTACTCAAGCTAAAATTGAGGCCGAAGAGGAAATGGACGAGGTAACAATAGAAAGGCAGGAGTTCAGATCCAACAGGACTATGAGCATCGACAGTGACAACAGGTCCGATAGGAGCGAAGAAGAAGACTCAAGGAGATCTCGTAAGAGGGCGGCGTCCACGTCCCCGTCTAGAATGCCAATGGACAAAAGAATTGCTCGATTCGAGTGCCCCAAATGCAGACAGAGGTTCGACTCGGTAAATGCATACGATATTCACCGCTACACCGCTCACAGTGATGACACCAAAACTGGTTTTGACGACCTTACCTATGTCGATTTCTCAAGCAAAAAGTTCGCGGAAATCGCTCGTGGAGTTTGTGAGAGAAATACTCACGTGACAATAACAGACCAGCGTTACAGATGCGATCTCTGCTCTAGAGATTTTCCATCTGGGCATACCTTAGATATTCACAGAAAGACGTGCACAATTAACACAAGAATTTCAAGCCCCGATAGAGAACATAGAGAAGATTTCTTCGCTAAGTTAGACCTAAGGAACAGGTCATTTGGTATCTCTGGTACATTAACGCCACCGATGGAAAGATTCACTCCAAAGTTCGACGATGGTCATATGACTACAAATGGCATTAGACACATTGATGCCGCCCGCGATCTGGCAGACATTCAATCGATATTAAACGTCACGTCAGCTGGTGGCCTTTTAGAGAGGCTTACTGGTTCAAGAGTGGCGGCTTTAGAAAGCGCTGTACTCACTCCTCCTGATACTATAATGAAAGAGCGAGAACAAGAAGAAACGCAAGATAATTTTGCAGCTGAATTTAGACGAATGAAATTGCGCGGAGAATTCCCTTGCAGATTGTGCCCAGCAAAGTTTCCAAATCTCAGAGCTTTGAAAGGACATAACAGAGTGCACTTGAGTGGAACTGGTCCGGGACCATATCAGTGCAACATGTGTCCACACGCTTCTTTAGATAAGGCAGCTTTGGTGCGTCATATGCGTACGCATAACGGTGACCGACCTTATGAGTGTGCTGTATGTAACTATGCTTTTACAACAAAAGCTAATTGTGAACGGCACTTGCGTAACAGACACGCCAAAGTAACTAGGGAAGATGTTAAAAGATCCATTATTTACCATCCATCCGAGGACCCAAATAACGATGAAGTTAACTCAAAACTAGCTCGAGATGATGTGAAGAGATCACTAGCCTTTCATACGCCTGATATAGATAGGCGAATTGAGGGCACAGGTCGCGATACACCGCTAACACATTTTACCCCAAGCTTTATAACAGATCGGCATCCCGTAACAAATTTGACCACAAAGGCTGTACCTGAAGCACCTTTAACCTCCAGAGATCCCGAACAACCTGCACCTCGAATTAAAGTCAAAGGCATTGGTCAACTGACGCAAATCCCTGAATTTAGACCTCCAGAACTGTCGTATAAAATAAACGAAGTTCAACCAGAGCCATATGATGAAGAAGTACCAGTAGACCTAAGCACAAGTGACAACAACAGCTGCGATGTCCTTGATCTCAGCAAGAAAAAGCGTGATAACGATTGTGATGAACCCAAAGCCCCACCCCGTACATCTTTCGAGCCTGACCCGGGTAGCGTCGCTGCATCGGCATACGAAAAGACGAGATTTCTTTTGGCTCAGCAAAGGCTCTTTGAATCATCTCTTCCTAAAATCGATCCAGCTTATTATGCCTCTCAGCTCTCACAGTTATATGCTGGTGCGGTCCCTAGTATCCCAGGCCTACCTTTACCGCCGTCTTTTCCTATTGCTCCTTATCTCCTTCAGCCATCCTTTTTTCCTCATCCAACTGATTCACAAGAGATGGCTGAAATTAAACAGAGGATACAAAAAGAGATAATACGGGGACTTAGCATGTCGGGGGGTAGACTGGTCCCTAATGAACAGGAAAATCAACAAAAATTAGAGCCTGAAGAGGAAGAAATAAAACCACCTCAAGTGATTTCCCCCTCTCCACCATCACCACTTCCCGAATCTCCGAGGCCTCAAATGAATAATAGTATAGTTCCACAGACTGATTCTGTCAAAATGGTTATAAAAAACGGTATCCTTATGCCAAAACAGAAACAAAGGCGATACCGAACCGAAAGACCCTTCTCATGTTCTCAATGCTCTGCACGCTTCACCCTCAGATCTAATATGGAGAGACATGTTAAGCAGCAGCACCCTCAACATTGGAGCGTACGGAGACCAGCGCCAAGAGCTCCGCCTCCATACCCCACTCCCGACTCAATCACTGACCGCATGAAATTTGCTCTGTTAGCTCGCCATTTGGAGAGACCATTACAACAATCTGAACGATCACCAGCACGACGAGACTCTGATGAAGTTGCTGACAATGAAGAAGATGAGGAGGATACCTTAGTTATTGATGAAGAACCTGATCATGATATCAAAGAAGATCACACTGCAGCTCGCCGTGCAGCGGCTGAAATTTTAATAGCTACGTGTCAACAAGAATTGAACAAAGACTTTGATCTTAAAATTGCGGGCAGTTTGATTAATAAGCCAGTGCTCATTAACAACGAGAAGCCAAATATTGAAACTAATCCTATTCCATTAACCCAAGAGTCTTCACCGGTAACGGTTGTACCAACACGCAGTGATGAAGAAGAAGATGAGGAAGGATTAGTTGCCTCCACCAGTGAAGGAAATAACTCTGGAAGCGATGAGAATAAATCTGAAACGGATACAGCTCAACCACCAAAGAAAAAGTCAGCGTACAGCCTTGCGCCAAACCGTGTATCCTGCCCTTATTGTCACAGAAAGTTCCCTTGGTCGTCATCACTACGTCGCCATGTCCTCACCCACACTGGACAGAAGCCATTCAAGTGTCCGCACTGCACATTACTCTTCACAACTAAGTCTAACTGCGACCGCCATCTCTTGCGAAAGCATGGAGGATCAGCTCGAGCAATTTTAGCTGAACCTATTCCAGAAACCATGTCTCCTCCTCAACCAGTAAACGACAATCGAGCAGTTCCTGACAGACCATACAAATGCACATCTTGTCCCACCAGTACTTTTTCTTCTCTGGAAACATTAAAGAAACATATGTCTTCAAGGCATGGAAGTGGTTCGCAACCAGGCTCCCCAATTCCAGAAGTTACTGAGGAATCTGCTGAAGGTGGTCTAGTTTTCAAGTGCCATTTGTGTGAAGCATCATTCAGTGACAGAAATGGTGCTTTGAACCACCTGGCTACTGGTCATACCTCAGAATATGAACAACTGCTGAGCAAAGGTGCTTTAGACGCTAATAGTGACAGGAGTGAAAGTGCGGACGATGATGAAAGAGGAAAGTTTCCTGATCATGCTAATAGAAAGgtgGTATGCGCATTCTGTGTACGTCGCTTCTGGTCAGCTGAAGACCTTCGCCGTCACATGCGAACTCATTCGGGTGAGAGGCCATTCGCATGCGACTTGTGTCGACGACGCTTTACATTGAAGCACAGCATGCTGCGCCATAGAAAGAAACACCGCGAGGAAATCACTGATGATGAAGAACCTTCACCACCAAATACGCCAATTGAGGAGAATGTTACTAATGGGTATCGCTATCAGGATGAGGATGGCTCTGGCAACGAGATCCCAAGCAACGTAAACAACAACAATTCCCCTCCATCGGCTCCTTACGACAAGAAGCTCAAACTTGATATGACATCGCGAAAATATTCTTCCGAGGCTGAGAATGACCCTGAAAACAGCGATCTCATTGGCAAACTACTGGGCATCCCGGACAAGACAATCAATAAGTTACTGTCTTCGGCAGACGAGGCAGCTAAAATACTCGGGGTAAACAAATGA
Protein Sequence: MYSFVTEIKTEEVITQAKIEAEEEMDEVTIERQEFRSNRTMSIDSDNRSDRSEEEDSRRSRKRAASTSPSRMPMDKRIARFECPKCRQRFDSVNAYDIHRYTAHSDDTKTGFDDLTYVDFSSKKFAEIARGVCERNTHVTITDQRYRCDLCSRDFPSGHTLDIHRKTCTINTRISSPDREHREDFFAKLDLRNRSFGISGTLTPPMERFTPKFDDGHMTTNGIRHIDAARDLADIQSILNVTSAGGLLERLTGSRVAALESAVLTPPDTIMKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDDVKRSLAFHTPDIDRRIEGTGRDTPLTHFTPSFITDRHPVTNLTTKAVPEAPLTSRDPEQPAPRIKVKGIGQLTQIPEFRPPELSYKINEVQPEPYDEEVPVDLSTSDNNSCDVLDLSKKKRDNDCDEPKAPPRTSFEPDPGSVAASAYEKTRFLLAQQRLFESSLPKIDPAYYASQLSQLYAGAVPSIPGLPLPPSFPIAPYLLQPSFFPHPTDSQEMAEIKQRIQKEIIRGLSMSGGRLVPNEQENQQKLEPEEEEIKPPQVISPSPPSPLPESPRPQMNNSIVPQTDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDSITDRMKFALLARHLERPLQQSERSPARRDSDEVADNEEDEEDTLVIDEEPDHDIKEDHTAARRAAAEILIATCQQELNKDFDLKIAGSLINKPVLINNEKPNIETNPIPLTQESSPVTVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSETDTAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCTLLFTTKSNCDRHLLRKHGGSARAILAEPIPETMSPPQPVNDNRAVPDRPYKCTSCPTSTFSSLETLKKHMSSRHGSGSQPGSPIPEVTEESAEGGLVFKCHLCEASFSDRNGALNHLATGHTSEYEQLLSKGALDANSDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEPSPPNTPIEENVTNGYRYQDEDGSGNEIPSNVNNNNSPPSAPYDKKLKLDMTSRKYSSEAENDPENSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01198142;
80% Identity: -