Basic Information

Insect: Diaphora mendica
Gene Symbol: -
Assembly: GCA_949125395.1
Location: OX421311.1:10850685-10856093[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0035 0.47 12.4 1.6 1 23 238 260 238 260 0.98

2 9 7.4 9.9e+02 2.0 0.2 3 23 285 306 283 306 0.88

3 9 0.0043 0.57 12.2 0.1 2 23 328 349 327 349 0.94

4 9 0.0019 0.25 13.3 0.9 1 23 353 375 353 375 0.98

5 9 0.0044 0.59 12.1 0.3 1 23 382 405 382 405 0.95

6 9 0.00012 0.016 17.0 1.8 1 23 440 463 440 463 0.96

7 9 0.00015 0.02 16.8 1.4 1 23 469 491 469 491 0.98

8 9 2.8e-06 0.00038 22.2 1.0 1 23 497 519 497 519 0.99

9 9 2.2e-06 0.00029 22.5 3.4 1 23 525 547 525 548 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0035	0.47	12.4	1.6	1	23	238	260	238	260	0.98
2	9	7.4	9.9e+02	2.0	0.2	3	23	285	306	283	306	0.88
3	9	0.0043	0.57	12.2	0.1	2	23	328	349	327	349	0.94
4	9	0.0019	0.25	13.3	0.9	1	23	353	375	353	375	0.98
5	9	0.0044	0.59	12.1	0.3	1	23	382	405	382	405	0.95
6	9	0.00012	0.016	17.0	1.8	1	23	440	463	440	463	0.96
7	9	0.00015	0.02	16.8	1.4	1	23	469	491	469	491	0.98
8	9	2.8e-06	0.00038	22.2	1.0	1	23	497	519	497	519	0.99
9	9	2.2e-06	0.00029	22.5	3.4	1	23	525	547	525	548	0.96

Sequence Information

Coding Sequence: ATGGCGACTGCGGCAGCTCCCGGAAAAAGCAAAGGTCCTATTATAGATCCTGCGCTGTGCCGCTGTTGCAGGTCCATTAAGAAATGTCGTCTTTTAACGACGGAGTACGAATGGATGGAGAAGAAGGAAATATATTCCGATATGTTTATGGATTGTTTTGGTCTTCTTCTGTCCCACCTGGATGGTGACAGCAAGGATTGTTGTGTGTGTGCAACGTGTGTGGTCCGACTGCGTGATGCATATGCGTTCAGACAACAAGTGTTACAATGTGAAGATGCATTTCTCAGCACCAAGATGCAACCTAAAGATGatGGTTCCAGTAAGGTTGAGGTGGAAGTGAAGACGGAGCCGATGGCTGGTGATGAGTCTGATGGTGCAATGGATGACAGGGATGATATTCGTGATGAGAATATGACAGAACTTCTAGACACAAAAGGTGTCAAGGATGATGTGTATGCAGAGCCAGTGTGCAAGCGAACCCGCGGCAAACACAAGGTGCACGTCAAGAGAGAGATCCTCCATAAGATGAACAAGCTGAGAGCTAAACTGGACCATATGTTGGACAAACCTGTAAAAACTCCAGTCAAGAAAGAAACGCAGAAGATAAAGAAGAAACAACAAGAATTAGACCACGACTATATGCTGTACAACAACGCTGTCACAATCGTCCATAACTCCTACGTCTGCCCCTTCCAGAACCGCATCAGTATATATTACTGCTTCTACTGCAGAGACCAATTCACAAACCCTAACGAACTCAGAGAACACACGTTAACCCACGACCCCGTAGAACTCTTTCAAAGTACAATGGAAAACCGTAAAATCCCTAAAATAGACATCACTAGAATCGATTGTCGATTGTGCAACGATAAAATCGATGACCTCGACACGTTCAAAAATCACATCTCTAGCGTTCACTCAAAAGTCGTGTATCCAGTTTCGAACgagtttttaaaattcaaattgtCTATGGATAATTTAATCTGTACAGAGTGTAATGCCGCGTTCCCGTATTTCGATGTTCTAAAGAAACACATGATAGATCATTTTGGTACTTACATATGCGATGTATGCGGAGCTTGTTTCCTTGAAAGAAACTCACTCAGAACTCACATTAAATCTCACACTAAAGTCGAAGAGAGTTTCCCATGCGAGATTTGCGGTAAAAACTTAAAATCGAAATATAGTAGGTATTTGCATGTCGCTACGGTCCATGAGAAGAAGCCAACAGTTAATTGTTATAAATGCGAGGCTAGTTTCTTGTCTTACGCGTTGAGAAACCGCCATTTAATTGAAGTTCACGGAGATAAAAGGACGTTTGCTTGTAAATTGTGCGACAAAGTATACAATAGACGGAAAACTTTAATGGAACACAACAGGAGGAACCACTTAAAGGTGTATAGGCATCAATGCGACTTGTGTGACCAGAGGTTTTATTTGCCGTCACGTTTGAAGGAAcatatggcaacccacactgGCGAGAGGAACTTCCGGTGTGAGTTCTGTGACAAGAGTTATCCGAGGCTACAGTCGTTGCAAGAACATATCCGGTCTCACAGCAACGAAAGACGTTACAAATGTGATGTGTGCAATTCAACGTTTACCCAAAACGGGAGTTTAAAAAATCACATGAAATCCCACCATGGAGGCTATGATTTAGATAATAGTTataattga
Protein Sequence: MATAAAPGKSKGPIIDPALCRCCRSIKKCRLLTTEYEWMEKKEIYSDMFMDCFGLLLSHLDGDSKDCCVCATCVVRLRDAYAFRQQVLQCEDAFLSTKMQPKDDGSSKVEVEVKTEPMAGDESDGAMDDRDDIRDENMTELLDTKGVKDDVYAEPVCKRTRGKHKVHVKREILHKMNKLRAKLDHMLDKPVKTPVKKETQKIKKKQQELDHDYMLYNNAVTIVHNSYVCPFQNRISIYYCFYCRDQFTNPNELREHTLTHDPVELFQSTMENRKIPKIDITRIDCRLCNDKIDDLDTFKNHISSVHSKVVYPVSNEFLKFKLSMDNLICTECNAAFPYFDVLKKHMIDHFGTYICDVCGACFLERNSLRTHIKSHTKVEESFPCEICGKNLKSKYSRYLHVATVHEKKPTVNCYKCEASFLSYALRNRHLIEVHGDKRTFACKLCDKVYNRRKTLMEHNRRNHLKVYRHQCDLCDQRFYLPSRLKEHMATHTGERNFRCEFCDKSYPRLQSLQEHIRSHSNERRYKCDVCNSTFTQNGSLKNHMKSHHGGYDLDNSYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01285860;
90% Identity: iTF_00707277;
80% Identity: -