Basic Information

Insect: Diaphora mendica
Gene Symbol: -
Assembly: GCA_949125395.1
Location: OX421313.1:5857654-5879141[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.099 13 7.9 0.2 1 23 394 417 394 417 0.94

2 9 0.0057 0.77 11.8 1.6 1 23 523 546 523 546 0.95

3 9 2e-05 0.0027 19.5 4.3 2 23 551 572 550 572 0.97

4 9 0.034 4.6 9.3 0.9 2 23 580 600 580 600 0.97

5 9 0.0013 0.17 13.8 0.4 2 21 607 626 606 631 0.93

6 9 0.0013 0.17 13.8 0.3 1 23 639 662 639 662 0.94

7 9 6.9e-05 0.0093 17.8 0.2 1 23 668 691 668 691 0.97

8 9 0.0004 0.053 15.4 0.3 1 23 701 723 701 723 0.93

9 9 0.00069 0.093 14.6 0.5 3 23 731 752 729 752 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.099	13	7.9	0.2	1	23	394	417	394	417	0.94
2	9	0.0057	0.77	11.8	1.6	1	23	523	546	523	546	0.95
3	9	2e-05	0.0027	19.5	4.3	2	23	551	572	550	572	0.97
4	9	0.034	4.6	9.3	0.9	2	23	580	600	580	600	0.97
5	9	0.0013	0.17	13.8	0.4	2	21	607	626	606	631	0.93
6	9	0.0013	0.17	13.8	0.3	1	23	639	662	639	662	0.94
7	9	6.9e-05	0.0093	17.8	0.2	1	23	668	691	668	691	0.97
8	9	0.0004	0.053	15.4	0.3	1	23	701	723	701	723	0.93
9	9	0.00069	0.093	14.6	0.5	3	23	731	752	729	752	0.95

Sequence Information

Coding Sequence: AtgcaaaaatataaagaatataataaGACTTACTACCTGGGGTTTGTTGATTTTAACAAAGCATTCGACACACTGGAACACGAGTTCATATGGAATGCACTAAAAACACAGGGCGTACAAACAAAGTACATACGAATACTCCAAAATGTATATACCAAGAGTACAGCGCAAGTTAAGTTAGAAACTATAGGCAAAGAATTTCCCATCAAGAGAGGCGTACGCCAAGGAGATCCCATCTCACCTAAATTATTGTCAGCCGTCTTAGAAATGATATTTAGGAACCTAGATTGGAGAAATAAAGGATTAAATATAAACGGCGAAAATCTGAGCCACTTACGTTTCGCAGATGACTTAATCATTTTCTCTGAGAGCCCAAAAACATTGGAACTAATGTTGCAACAACTAGCCGATGAAAGTGACAAGGCAGGTCTAGCAATGAATTTagctaaaacaaaaattatgtcAAACTCTACACAAAAAGATAACATAATAGTGAATAAAGAGCAAATAGAATATGTACATGAATACGTTTACTTAGGACAACTAATATCTACCGAAGACTGcatgaaaaaagaaattgaacgaAGAATAGCTAACACCTGGAAACGATATTGGTCACTCAGCGAAGTTATGAAGAACAAAGAAATACCgatgaaagaaaaaagaaagACTCTGGACCATACGTACATGTGTACACAGTCCCTATCAGCTCTCGATATTGAGACGAAGGTGGAATATGATAAAATCTACTTTGATTTCTCGAGCGCCCCTGAAGAACAACAGTACATAACCATCAGTACAGCTGAGTGCATTAAAAACGAACATTATGATGTGGCTCAAGTCGTTCGGGATAATATCACTTTGGACATCGATGACAATATGCTAGAAGTGCCAGAGATAGTGTTAAAAAATCCAGTAACCGGCGTGATGTCTCACATAGTGGTCGGGGCTGACTCTCTAGTTTCATCCACTGAGACGATCACCACCCACGTGGGAGAGATGCCGCATCTAACTATTGAacCCCTTCAGACTCCAAAGTTGGAAACTGTAATAATATGTCAAGATAAAAAAGACAAAGACGAACCAAAAGCAACGTTTATTACTGAGTATATGAGTGACGCTGATATGTTGGCTTCCAGGGAAGAGGCTAAGAGTAAAGTGCAGTATGCTGGTTCCGCTTACAAGTGTGAGCTGTGCGTCATCGGGTTCTACACGCAACAGCAGGTTGAGGACCACTTCGAGTCGGCTCACAGAGCGAAACCAGGTCAAGTGGCATGCAAGGTGTGCTACAGCTATGTGAACGAGAGCAAACTGCCGCAACACACAGACGGACACTACCTACGCTATTCTTGCAAGCTGTGCTCGCAAGTGGAGTACAACCTGAGGCCTGCCCAGCTCCACGCCAGGAGACACCTGACCCGCTCCCTGCCCAGTGCGGTCTTCAACATCGGGGATATCGGACCCACTGCTGGGAAGAGTAAAAAGAAAAAGGATAAAGAATCACCGCCGATACCAGCGAAACCTGGTGACCTTCGGAAGCTGTTGTCGAAGACAACCATCGAGGGGTACCAGTGTCTGGAGTGCGATATGTTCTTCAAGAACTCCCGCGCTCGCAAGAACCACGTGGACCGCTATCACCGCGAGGGTCTGCAGTGTGACCACTGTAAGAAGAGGTTCGTCAACAAAACTACACTGACCACACATCTCAGACTCCACGAAGGTCCATTACCAAGGGAAGAATGTCCTATCTGCCATAAAATGGTTCGCGTAATTCAACTGAAATATCACATACAGAGGCACGAAAATAAGAATCGTATCGAATGCGTCGACTGTAACAAGATATTCTCACACTTAGCCACTTATCAAGCGCATCTTAAATACTCCAGGGCCCACGCGTCAGACCAGGTGTTCAAATTCCCATGTCCAATGTGCAATAAAGGTTACCCCACTAAGGAGGCAATGCAGGATCACTTCAATTATCAACATCTCGGCAAGACTTCGCACAAgtgtcctgtctgtgataagCCGATAGCATCACGAGCAAACGTAGAGAAGCACATGATGCGAGTCCACGGCGAGAAGAAGGAGAAACCAAGGAACCACGTGTGTCAAGCGTGCGGGAAGGGATTCACGGACAGAAAAGCTTTAACCCAACACGAGGTCATCCACTCCGGAGAGCGGCCCCTAGCGTGTGATATTTGCGCTCAAACGTTCAAGCAAAAAGCGTCTTTATATACACACAAGAAGAGGGTCCACAAAGTGTTCCCGGCCAAACGACTTGTAGAGTATATGGACTCTAAACCTTAG
Protein Sequence: MQKYKEYNKTYYLGFVDFNKAFDTLEHEFIWNALKTQGVQTKYIRILQNVYTKSTAQVKLETIGKEFPIKRGVRQGDPISPKLLSAVLEMIFRNLDWRNKGLNINGENLSHLRFADDLIIFSESPKTLELMLQQLADESDKAGLAMNLAKTKIMSNSTQKDNIIVNKEQIEYVHEYVYLGQLISTEDCMKKEIERRIANTWKRYWSLSEVMKNKEIPMKEKRKTLDHTYMCTQSLSALDIETKVEYDKIYFDFSSAPEEQQYITISTAECIKNEHYDVAQVVRDNITLDIDDNMLEVPEIVLKNPVTGVMSHIVVGADSLVSSTETITTHVGEMPHLTIEPLQTPKLETVIICQDKKDKDEPKATFITEYMSDADMLASREEAKSKVQYAGSAYKCELCVIGFYTQQQVEDHFESAHRAKPGQVACKVCYSYVNESKLPQHTDGHYLRYSCKLCSQVEYNLRPAQLHARRHLTRSLPSAVFNIGDIGPTAGKSKKKKDKESPPIPAKPGDLRKLLSKTTIEGYQCLECDMFFKNSRARKNHVDRYHREGLQCDHCKKRFVNKTTLTTHLRLHEGPLPREECPICHKMVRVIQLKYHIQRHENKNRIECVDCNKIFSHLATYQAHLKYSRAHASDQVFKFPCPMCNKGYPTKEAMQDHFNYQHLGKTSHKCPVCDKPIASRANVEKHMMRVHGEKKEKPRNHVCQACGKGFTDRKALTQHEVIHSGERPLACDICAQTFKQKASLYTHKKRVHKVFPAKRLVEYMDSKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00281707;
90% Identity: -
80% Identity: -