Dmen005038.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diaphora mendica
Gene Symbol
-
Assembly
GCA_949125395.1
Location
OX421311.1:9422690-9424412[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00027 0.037 15.9 0.3 1 23 50 73 50 73 0.94
2 10 0.0023 0.31 13.0 0.1 2 23 104 126 103 126 0.95
3 10 0.0039 0.52 12.3 2.3 2 23 149 170 149 171 0.95
4 10 0.0003 0.04 15.8 1.7 1 23 176 199 176 199 0.97
5 10 0.066 8.9 8.4 0.2 1 23 204 227 204 227 0.91
6 10 0.00017 0.022 16.6 0.8 2 23 233 255 232 255 0.94
7 10 0.00019 0.026 16.4 0.3 2 23 263 285 262 285 0.97
8 10 0.063 8.5 8.5 0.0 2 23 292 313 291 313 0.95
9 10 7.7e-07 0.0001 23.9 0.7 1 23 319 341 319 341 0.94
10 10 8.9e-07 0.00012 23.7 2.2 1 23 347 370 347 370 0.97

Sequence Information

Coding Sequence
ATGAAAAGACTCGGTTCGAAATTCGATACAGTGGaagacaaaaataagaaaatggaaGTTGCCAGAAAACTTTTGATTAAGAGGCGTAATGTCGAATATGTATTACAGTATAGTAATGTGACACCTTTCATGTGGCACAAGGGCAAGTATAAATGCTTTTACTGCAACGAAACTACCAAAGACCCAGGCCTGCTAAGAGAACACACTGCAAATGTTCACCAATTTGCAAATCTTGAACTAGCAGTTTTcgacagaacaaaaaataatagaaataaagatGCTGCAGTCAAAATTGATGTTACTGGAATATCTTGCAAGCTTTGTCCTCAAGTTGTCACGAATTTGGAAGAACTAATACATCATTTGATTATAGCACATGATGCGGAATATGACGTTAGTGTTCCAAATTGCTTACTTCCCTTCAAATTAGACAAAGATCAACCTACGTGTCCCACATGTAATATGAAATTTGTTTTCTTCGAATATTTACTCAGGCATGCCAACAAGCACCACTTATCCCATCACTATATTTGTGATGTATGCGGTACCAGTTTCCAAGGTGAGAACCatctaaaaatgcattacagaTACTATCATAGAGAAGGCGGATATACCTGCGAGTATTGTGGTATAAATCTCGCGACGTTGTCGAAGAAAATTCTCCATGAGAAAAACGTGCATTTGGTGAATCTTTCGACTTGCCCTCATTGCCCAGAAACATTTAAAAGTCCGTATCTAAAGAAACTACATATGGCAAACATTCATGGCGTAGAGgaacttaaaattaaatgtccTTATTGTTCAAAGGTGTATCCGCAGGAGTCTATAATGTCGAGACACATGCGACGAGTGCACTTGAGGGAGAAGAACGTCGAATGTGAAGTTTGTGGCGACAAATTTTTCGGACCATACGATGTGAAGTTGCACATGGTCAAACATAACGGAGACAAGAAGTTTGTTTGTTCTGTGTGCGGCAAGAAGTTCTCTAAGCGAAGTAATCTGAATTCTCATGTGGTATTACACTCCAGAGACAAAGATTATGTATGCGGGATTTGTACTAAAACTTTCGTTCACCAGACAAATCTCAAAATGCACATTAGAAATAGACACCCAGACGTTGAGTTCGATGAAACTAGAATTGTTGACGAAATTCATGAAAATGAAATGGTGCAGATGGAAATTATCCAAGATGAACTGGAAGGCGAAGTAGCTGGACAGTATATTCAATGA
Protein Sequence
MKRLGSKFDTVEDKNKKMEVARKLLIKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPGLLREHTANVHQFANLELAVFDRTKNNRNKDAAVKIDVTGISCKLCPQVVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGINLATLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHMANIHGVEELKIKCPYCSKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGDKKFVCSVCGKKFSKRSNLNSHVVLHSRDKDYVCGICTKTFVHQTNLKMHIRNRHPDVEFDETRIVDEIHENEMVQMEIIQDELEGEVAGQYIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01285796;
90% Identity
iTF_00925098;
80% Identity
iTF_00441795; iTF_00441753; iTF_00441755;