Basic Information

Insect: Diaphora mendica
Gene Symbol: -
Assembly: GCA_949125395.1
Location: OX421311.1:9536947-9539929[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.017 2.3 10.3 4.2 1 23 92 114 92 114 0.99

2 12 1.5e-05 0.002 19.9 0.0 1 21 120 140 120 141 0.95

3 12 0.0073 0.98 11.4 1.4 1 23 214 237 214 237 0.94

4 12 0.0022 0.3 13.0 0.1 2 23 264 286 263 286 0.96

5 12 0.21 28 6.9 4.5 2 23 309 330 308 330 0.97

6 12 2.3e-06 0.00031 22.4 0.0 1 23 334 356 334 356 0.98

7 12 0.0098 1.3 11.0 5.6 1 23 361 383 361 383 0.99

8 12 0.45 60 5.8 1.2 1 23 390 413 390 413 0.89

9 12 3e-05 0.004 19.0 1.3 1 23 417 440 417 440 0.98

10 12 0.00011 0.014 17.2 3.4 1 23 446 468 446 468 0.98

11 12 6.3e-07 8.5e-05 24.2 2.0 1 23 474 496 474 496 0.99

12 12 1.7e-05 0.0022 19.7 3.4 1 23 502 525 502 525 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.017	2.3	10.3	4.2	1	23	92	114	92	114	0.99
2	12	1.5e-05	0.002	19.9	0.0	1	21	120	140	120	141	0.95
3	12	0.0073	0.98	11.4	1.4	1	23	214	237	214	237	0.94
4	12	0.0022	0.3	13.0	0.1	2	23	264	286	263	286	0.96
5	12	0.21	28	6.9	4.5	2	23	309	330	308	330	0.97
6	12	2.3e-06	0.00031	22.4	0.0	1	23	334	356	334	356	0.98
7	12	0.0098	1.3	11.0	5.6	1	23	361	383	361	383	0.99
8	12	0.45	60	5.8	1.2	1	23	390	413	390	413	0.89
9	12	3e-05	0.004	19.0	1.3	1	23	417	440	417	440	0.98
10	12	0.00011	0.014	17.2	3.4	1	23	446	468	446	468	0.98
11	12	6.3e-07	8.5e-05	24.2	2.0	1	23	474	496	474	496	0.99
12	12	1.7e-05	0.0022	19.7	3.4	1	23	502	525	502	525	0.98

Sequence Information

Coding Sequence: aTGCTTTGGTCTAACGCTACTCCTATTAGACGAGTTGGAGATAAAGGTGATGCCTGTTGTTATTGCAAGGATCAATACTTGGAGCCTAGAGAATTAAACAACCATACTTTAGAAAATCACAAAGACTTTCGAAAAGCCTTCTCTCTCAAACAGTTGTCTAGAGATCGATTTATTGTGAAGTTAGATATAACTTCACTAAAATGCAAGATTTGCGATCAAAATATCGACTGTCGGGACAAGTTTTTGCAGCATCTGAAGTTTAATACAGAAACATTCCAATGTTGTGTTTGCAAAAGCACTTTTGATAAGTTTAGAATGTTACTCGAGCACATGAATACGCACTATAAATACCGAAATTATGTATGTGATATTTGTGATGTAGTTTTCGTAAATAACAGCGGTCTTCAGACGCACATGACTGTACCTAATTCTGGTATCTTTAAATgtCGAGTAATAGTCAAAGCGAAGATTCAAAGAAACCAACCGGACGAAGTAGAACACAAATCTGTTACTCGAAAAACCCCACAAACATCGATAATGCCACTGAAAACTAAGGCTTTACCTAAACACCGtgcaaatataaaagaaattatGCTCTCTTCAAATGCTACACCAATAAGACGTATCGGAGACATGGGTTTCGTATGCTGTTACTGTGATAATCAGTACGTAAAAGCAGCAGAATTAAAACGACATACACTTGAATCCCATCAAGATATCCGAAAGGCTTTCTTCATTTCAAAGTTGGCAGAAGATCGGTTCGTTGTCAAATTGGATataactacattacgatgcaaaGTCTGCGATCGGAACATCGATACCTTAGCACAGTTAATGGACCATCTCAGGATCGACCATCAAAGAACAATATACACCGACATTAAAAACCAAATAATCCCGTTTAAGTTCGTAACAGATACACTGCAGTGCTGTATTTGTATGCATACCTTTagcaaatttaaaatgttactcGAACATATGAATATACATTACAGAAATTATATTTGTGATATCTGCGACGTAGGTTTTGTTAATGCTGTCAATTTGACCAATCATATGCTCAcacatgaaaataaaacatataaatgtgACCACTGTTCCCAAGTCTTTAACACAAGGAACAAGAAACGGCTACACGAAAGAAAGCATGGTTTTAAGACGTTGGTTTTTAAGTGTGTACATTGTAGTGCTACCTTTAACGAATATAGGAAGAAAGAAGCTCATTTGGCTTTGGAGCATGGTCAAGTATACAAATGCCAGGCGTGTgagaaagtttttaaaaataccAAAGCTCTCAACAATCACGTTAGACGAAATCATTTGATGGAGAGACCACATAAATGCAAAGAATGCGACATGAGTTTCTACATGACCACAGAACTTAAAAATCACATGATTAAACACACTGGATCTAGGTCTTTTAAGTGCACGGTCTGTTTTAAAACTTTTGGGAGATCAAGTTCTTTGAGAGAGCATATGAAAATTCATAATGATGATAGACGATTCAAATGCGAATATTGCGGCCAATCGTTTGTCCAAAAGTGTAGCTGGAGAGGTCATATGAGGTCCAAACATGATGAAATTgtgtaa
Protein Sequence: MLWSNATPIRRVGDKGDACCYCKDQYLEPRELNNHTLENHKDFRKAFSLKQLSRDRFIVKLDITSLKCKICDQNIDCRDKFLQHLKFNTETFQCCVCKSTFDKFRMLLEHMNTHYKYRNYVCDICDVVFVNNSGLQTHMTVPNSGIFKCRVIVKAKIQRNQPDEVEHKSVTRKTPQTSIMPLKTKALPKHRANIKEIMLSSNATPIRRIGDMGFVCCYCDNQYVKAAELKRHTLESHQDIRKAFFISKLAEDRFVVKLDITTLRCKVCDRNIDTLAQLMDHLRIDHQRTIYTDIKNQIIPFKFVTDTLQCCICMHTFSKFKMLLEHMNIHYRNYICDICDVGFVNAVNLTNHMLTHENKTYKCDHCSQVFNTRNKKRLHERKHGFKTLVFKCVHCSATFNEYRKKEAHLALEHGQVYKCQACEKVFKNTKALNNHVRRNHLMERPHKCKECDMSFYMTTELKNHMIKHTGSRSFKCTVCFKTFGRSSSLREHMKIHNDDRRFKCEYCGQSFVQKCSWRGHMRSKHDEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -