Dmen005200.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- -
- Assembly
- GCA_949125395.1
- Location
- OX421311.1:11106508-11115277[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.01 1.4 10.9 0.1 1 23 230 252 230 252 0.94 2 10 0.032 4.3 9.4 0.1 2 20 280 298 279 300 0.93 3 10 0.00011 0.014 17.2 0.4 3 23 325 345 324 345 0.98 4 10 1e-07 1.4e-05 26.7 0.2 1 23 349 371 349 371 0.98 5 10 0.017 2.3 10.2 0.7 1 23 376 399 376 399 0.94 6 10 0.18 24 7.1 0.4 1 23 405 428 405 428 0.92 7 10 7.9e-05 0.011 17.6 0.7 1 23 435 458 435 458 0.98 8 10 2.8e-05 0.0037 19.0 2.3 1 23 464 486 464 486 0.98 9 10 1.3e-05 0.0018 20.1 3.1 1 23 492 514 492 514 0.98 10 10 1.9e-06 0.00025 22.7 1.0 1 23 520 542 520 542 0.98
Sequence Information
- Coding Sequence
- atgGATTCTGAGATAATGGTAGAGTCTCTGCCATTGCTCGGCACGTGCAATTTGTGCTTGGAAGAAGGTGTAGTTAAAAGTATGATTTTAGCTCACCAATACAAAGGGAACACAGAAATTTATTCTGAAATGCTGATAAAATGCTTTTCAATAGACATCACAACCCTCCATCTCGGTGACACTAAGCCTTTGGTTTGCAACACTTGCATCAATAGGCTGAGGGACTCGGCTGACTTTAAACAACAAGTGCTGGCTTCGCTTGATACCTTGGAGACTATGGTTAAAATTAATAAGGAAGAGAAGAACTCTTTAGGAGAAAATGTGAAAAAGGAGAACTGTGTGGTAGCTGATGATTTTGATGATGACTttcataatgatgatgatgacgtgtATAAAGAGAAAAAGAAGAACTCTTTAAGAGAACGTGTGAAAAAGGAGGACTCGATGGAATCTGATGATTTTGATGACGATTttcctgatgatgatgacatggatatagGTCTCAAAACTGTAATCAAGAAAGAAAAAGAACATAGGGTCTTTAGTCGAAAAACTCGCAGCAAAACAGTGACGACAAAGAAGATAAAATTATCGAAGTATCCTTTAAAAAAGACCACAGATCTATCAGAAACGGAAGCCATGTTAAATATAGGACTATTCCCatttaaaataaagaagaaTCGATCGTACTCCTGCTCAATATGTCCAGAGAAGTCTACAAATCTAGATGATATTAAGACTCACATAGTCGATCACAACAAGACAAATATAAGTTTGGCATTCAAAAAAATGATGTCATCCAACTCCCATAGGTTCTACAAATCTGCTGTTAATCTAAGATGTAAGATGTGCACCACAGATGTTAGTAATTACGAAGAATTGAAACAGCACATAGAGAATTGTACtagattaaaatttacaaatagaAAATGGAATAATTTGCCGTTCAAGCTTGAGAAAGACCAAGTCGATTGTCCGGTATGtaagaaaacttttttaaattatgtaaatttgAATACTCACATGAATATTCACTATCCTAATTATATTTGTGAAAATTGTGGGAAAGCTTTCGCTTCGAAGGCCAGACTTCGGGCTCATATGCGGACACACGAAGTAGGTACATTTCCTTGTAAATATTGTGATCAGATCTTTGACCGAGTAACAAAAAGAGAAAACCATGTATCGAAAGAACACAAATCTGGTGTTAGGTATGCTTGCAAACGGTGTAATATATCTCTGACGTCATTTTACGCTAGACAGAAACATTTGGCAGAAATACATAACGAAGAATTAAAAAGATACAAATGTAAAGCATGTCCACAATCTTATATAACTCCTGGACATCTCTCAAGTCATGTCCGCAGAGATCATTTGAACGAACGTAACCACAAGTGCGATAAGTGCGATCTGGCTTTTTATACAAAGAATGCTTTGAAAATGCATATGATCAAACATGATGGGGAACGGATACACACTTGTCCGGTCTGTCAGAAGTCTTACCAGAGGAAAAAAACTCTGCGAGAACATTTGAGGATTCATAATAATGATAAAAGATTTGTTTGCCCAGTGTGTGGACGCGCCTTCACTCAGAAATGTACCCTCAAAGGTCATTTGAAAGTCCATGAGAGACAATTCGATGAAGACGATAGAGTGCCACAGCCTTTACATTCGATATAA
- Protein Sequence
- MDSEIMVESLPLLGTCNLCLEEGVVKSMILAHQYKGNTEIYSEMLIKCFSIDITTLHLGDTKPLVCNTCINRLRDSADFKQQVLASLDTLETMVKINKEEKNSLGENVKKENCVVADDFDDDFHNDDDDVYKEKKKNSLRERVKKEDSMESDDFDDDFPDDDDMDIGLKTVIKKEKEHRVFSRKTRSKTVTTKKIKLSKYPLKKTTDLSETEAMLNIGLFPFKIKKNRSYSCSICPEKSTNLDDIKTHIVDHNKTNISLAFKKMMSSNSHRFYKSAVNLRCKMCTTDVSNYEELKQHIENCTRLKFTNRKWNNLPFKLEKDQVDCPVCKKTFLNYVNLNTHMNIHYPNYICENCGKAFASKARLRAHMRTHEVGTFPCKYCDQIFDRVTKRENHVSKEHKSGVRYACKRCNISLTSFYARQKHLAEIHNEELKRYKCKACPQSYITPGHLSSHVRRDHLNERNHKCDKCDLAFYTKNALKMHMIKHDGERIHTCPVCQKSYQRKKTLREHLRIHNNDKRFVCPVCGRAFTQKCTLKGHLKVHERQFDEDDRVPQPLHSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01198045;
- 90% Identity
- iTF_01198045;
- 80% Identity
- -